DreEX0047907 @ danRer10
Exon Skipping
Gene
ENSDARG00000016794 | mtmr6
Description
myotubularin related protein 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5557]
Coordinates
chr24:24904209-24906949:+
Coord C1 exon
chr24:24904209-24904341
Coord A exon
chr24:24904417-24904526
Coord C2 exon
chr24:24906824-24906949
Length
110 bp
Sequences
Splice sites
3' ss Seq
AAAGTGTTTTTTTCTTGTAGTGG
3' ss Score
6.14
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
Exon sequences
Seq C1 exon
TTGAACGCATTGGCAAATCGAGCGGCAGGGAAAGGATATGAGAATGAGGACAATTACTCCAATATCCGCTTCCAGTTTGTGGGCATTGAGAACATCCATGTTATGAGGGGAAGTTTGCAAAAGCTTCTAGAAG
Seq A exon
TGGTGGGAACACGCTCCCTTTCTATGACTGATTATCTGGTTGGACTGGAAAACAGCGGATGGTTGCGTCACATCAAAGCCATCATGGATGCAGCTATATTCCTTGCCAAA
Seq C2 exon
GCTGTGAGTGTGGAGGGCGCCAGTGTCCTGGTGCACTGCTCTGATGGATGGGATCGGACAGCTCAGGTCTGCGCTTTAGGCTCTCTGCTGATGGATCCATACTATCGCACCATCAAAGGTTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016794-'7-10,'7-9,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(10.5=100)
C2:
PF066029=Myotub-related=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGCATTGGCAAATCGAGC
R:
CATGAAACCTTTGATGGTGCGA
Band lengths:
257-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]