RnoEX0056464 @ rn6
Exon Skipping
Gene
ENSRNOG00000011420 | Mtmr7
Description
myotubularin related protein 7 [Source:RGD Symbol;Acc:1306608]
Coordinates
chr16:54820346-54844367:+
Coord C1 exon
chr16:54820346-54820480
Coord A exon
chr16:54843063-54843172
Coord C2 exon
chr16:54844242-54844367
Length
110 bp
Sequences
Splice sites
3' ss Seq
TAACAGGATTTTTCTTACAGTAT
3' ss Score
4.23
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GCCTCCATCTGCAGGAGCAGCCAGCCCCTTTCCGGCTTCAGTGCTCGGTGCCTGGAGGATGAGCAGATGCTCCAAGCCATCAGGAAAGCCAATCCCAGAAGTGACTTCATTTACGTCGTGGACACGAGGCCTAAA
Seq A exon
TATGTGAACTTAAATCTCCATCCATGAGTGATTTCCTATGGGGGCTCGAGAACTCAGGCTGGCTGAGGCATATCAAAGCCATCATGGATGCAGGGATCTTCATTGCAAAG
Seq C2 exon
GCAGTTTCAGAGGAAGGGACAAGTGTGCTTGTCCACTGTTCTGACGGTTGGGACAGAACGGCCCAGGTGTGCTCGGTGGCAAGCCTGCTGCTGGACCCTTACTATCGGACTCTGAAAGGATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011420_MULTIEX2-2/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(10.5=100)
C2:
PF066029=Myotub-related=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCATCTGCAGGAGC
R:
CGATAGTAAGGGTCCAGCAGC
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]