Special

MmuEX6035395 @ mm10

Exon Skipping

Gene
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:40562570-40581546:-
Coord C1 exon
chr8:40581414-40581546
Coord A exon
chr8:40563960-40564069
Coord C2 exon
chr8:40562570-40562695
Length
110 bp
Sequences
Splice sites
3' ss Seq
TAACATGGTTTTTCTTACAGTGT
3' ss Score
8.38
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
CTTAATGCGATGGCAAATCGTGCTGCAGGGAAAGGCTATGAGAATGAAGACAATTATTCCAATATCAAGTTTCAGTTTATCGGCATAGAGAACATCCACGTCATGAGGAACAGTCTTCAGAAAATGCTGGAAG
Seq A exon
TGTGTGAACTTAAATCTCCCTCTATGAGTGATTTCCTGTGGGGACTGGAGAACTCAGGCTGGCTGAGGCACATCAAAGCCATCATGGATGCAGGGATCTTCATTGCAAAG
Seq C2 exon
GCAGTTTCAGAGGAAGGGGCAAGTGTGCTTGTTCACTGTTCTGACGGCTGGGACAGAACGGCCCAGGTGTGCTCGGTGGCTAGCCTGCTGCTGGACCCTTACTACCGGACTCTGAAAGGATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431-'29-18,'29-17,31-18=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.030 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(10.5=100)
C2:
PF066029=Myotub-related=FE(12.0=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCGTGCTGCAGGGAAAGG
R:
TGAATCCTTTCAGAGTCCGGT
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types