MmuEX6035395 @ mm9
Exon Skipping
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:41647924-41666900:-
Coord C1 exon
chr8:41666768-41666900
Coord A exon
chr8:41649314-41649423
Coord C2 exon
chr8:41647924-41648049
Length
110 bp
Sequences
Splice sites
3' ss Seq
TAACATGGTTTTTCTTACAGTGT
3' ss Score
8.38
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
CTTAATGCGATGGCAAATCGTGCTGCAGGGAAAGGCTATGAGAATGAAGACAATTATTCCAATATCAAGTTTCAGTTTATCGGCATAGAGAACATCCACGTCATGAGGAACAGTCTTCAGAAAATGCTGGAAG
Seq A exon
TGTGTGAACTTAAATCTCCCTCTATGAGTGATTTCCTGTGGGGACTGGAGAACTCAGGCTGGCTGAGGCACATCAAAGCCATCATGGATGCAGGGATCTTCATTGCAAAG
Seq C2 exon
GCAGTTTCAGAGGAAGGGGCAAGTGTGCTTGTTCACTGTTCTGACGGCTGGGACAGAACGGCCCAGGTGTGCTCGGTGGCTAGCCTGCTGCTGGACCCTTACTACCGGACTCTGAAAGGATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431-'10-9,'10-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(10.5=100)
C2:
PF066029=Myotub-related=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCGTGCTGCAGGGAAAGG
R:
TGAATCCTTTCAGAGTCCGGT
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: