GgaEX0020293 @ galGal4
Exon Skipping
Gene
ENSGALG00000013641 | MTMR7
Description
myotubularin related protein 7 [Source:HGNC Symbol;Acc:HGNC:7454]
Coordinates
chr4:62724765-62734203:+
Coord C1 exon
chr4:62724765-62724897
Coord A exon
chr4:62728897-62729006
Coord C2 exon
chr4:62734003-62734203
Length
110 bp
Sequences
Splice sites
3' ss Seq
AGATTAAGCTTATTTTACAGTTT
3' ss Score
2.92
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CTCAATGCAATGGCAAACCGAGCAGCAGGGAAGGGATATGAAAATGAAGACAACTACTCCAACATCAAGTTTCAATTCATAGGCATTGAGAACATCCATGTCATGAGAAACAGCCTGCAGAAAATGCTTGAAG
Seq A exon
TTTGTGAAATGAAATCACCTTCAATGAGTGACTTCCTGTGGGGCCTTGAAAATTCTGGCTGGCTGAAGCATATCAAAGCCATTATGGATGCTGGCATCTTTATCGCAAAG
Seq C2 exon
GTATGGCAATTTAGATGGAGATCCAAAGGAGATATCCCCTGTTATTGACCAGTTCCTCGAGTGTGTCTGGCAGCTAATGGAACAGTTTCCTTGTGCCTTTGAGTTCAATGAGAGATTCTTGATCCACATACAGCACCACATCTATTCCTGCCAGTTTGGTAACTTCCTGTGTAACAGCCAGAAGGAGAGACGAGAGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(10.5=100)
C2:
PF066029=Myotub-related=PD(19.2=97.1)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGCAGGGAAGGGATATGA
R:
TGTGGTGCTGTATGTGGATCA
Band lengths:
253-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]