GgaEX0020293 @ galGal3
Exon Skipping
Gene
ENSGALG00000013641 | MTMR7
Description
NA
Coordinates
chr4:64961905-64968890:+
Coord C1 exon
chr4:64961905-64962037
Coord A exon
chr4:64966037-64966146
Coord C2 exon
chr4:64968765-64968890
Length
110 bp
Sequences
Splice sites
3' ss Seq
AGATTAAGCTTATTTTACAGTTT
3' ss Score
2.92
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CTCAATGCAATGGCAAACCGAGCAGCAGGGAAGGGATATGAAAATGAAGACAACTACTCCAACATCAAGTTTCAATTCATAGGCATTGAGAACATCCATGTCATGAGAAACAGCCTGCAGAAAATGCTTGAAG
Seq A exon
TTTGTGAAATGAAATCACCTTCAATGAGTGACTTCCTGTGGGGCCTTGAAAATTCTGGCTGGCTGAAGCATATCAAAGCCATTATGGATGCTGGCATCTTTATCGCAAAG
Seq C2 exon
GCTGTGGCTGAGGAAGGTGTGAGTGTGCTTGTTCACTGCTCTGATGGCTGGGATAGAACAGCCCAGGTTTGCTCTGTAGCAAGCCTTCTCTTGGATCCGCATTACAGAACTATGAAGGGATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641-'7-10,'7-8,8-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(10.5=100)
C2:
PF066029=Myotub-related=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGCAAACCGAGCAGCAG
R:
CCCTTCATAGTTCTGTAATGCGGA
Band lengths:
244-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]