GgaEX0020294 @ galGal3
Exon Skipping
Gene
ENSGALG00000013641 | MTMR7
Description
NA
Coordinates
chr4:64966037-64969666:+
Coord C1 exon
chr4:64966037-64966146
Coord A exon
chr4:64968765-64968890
Coord C2 exon
chr4:64969617-64969666
Length
126 bp
Sequences
Splice sites
3' ss Seq
AACTTTTTATGTGTTCTCAGGCT
3' ss Score
7.87
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
TTTGTGAAATGAAATCACCTTCAATGAGTGACTTCCTGTGGGGCCTTGAAAATTCTGGCTGGCTGAAGCATATCAAAGCCATTATGGATGCTGGCATCTTTATCGCAAAG
Seq A exon
GCTGTGGCTGAGGAAGGTGTGAGTGTGCTTGTTCACTGCTCTGATGGCTGGGATAGAACAGCCCAGGTTTGCTCTGTAGCAAGCCTTCTCTTGGATCCGCATTACAGAACTATGAAGGGATTCATG
Seq C2 exon
GTTTTAATTGAAAAAGACTGGGTTTCCTTTGGTCACAAATTTAACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641-'8-11,'8-10,9-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.5=100)
A:
PF066029=Myotub-related=FE(12.0=100)
C2:
PF066029=Myotub-related=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAATGAAATCACCTTCAATGA
R:
TGTGGTTAAATTTGTGACCAAAGGA
Band lengths:
157-283
Functional annotations
There are 0 annotated functions for this event