RnoEX6055672 @ rn6
Exon Skipping
Gene
ENSRNOG00000011420 | Mtmr7
Description
myotubularin related protein 7 [Source:RGD Symbol;Acc:1306608]
Coordinates
chr16:54843063-54846034:+
Coord C1 exon
chr16:54843063-54843172
Coord A exon
chr16:54844242-54844367
Coord C2 exon
chr16:54845985-54846034
Length
126 bp
Sequences
Splice sites
3' ss Seq
CACAGTGATTGTCATTTCAGGCA
3' ss Score
4.68
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TATGTGAACTTAAATCTCCATCCATGAGTGATTTCCTATGGGGGCTCGAGAACTCAGGCTGGCTGAGGCATATCAAAGCCATCATGGATGCAGGGATCTTCATTGCAAAG
Seq A exon
GCAGTTTCAGAGGAAGGGACAAGTGTGCTTGTCCACTGTTCTGACGGTTGGGACAGAACGGCCCAGGTGTGCTCGGTGGCAAGCCTGCTGCTGGACCCTTACTATCGGACTCTGAAAGGATTCATG
Seq C2 exon
GTGTTAATTGAAAAGGACTGGATTTCCTTTGGACATAAATTTAATCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011420-'21-20,'21-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.5=100)
A:
PF066029=Myotub-related=FE(12.0=100)
C2:
PF066029=Myotub-related=FE(4.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAACTTAAATCTCCATCCATGA
R:
TTATGTCCAAAGGAAATCCAGTCC
Band lengths:
146-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]