GgaEX0020294 @ galGal4
Exon Skipping
Gene
ENSGALG00000013641 | MTMR7
Description
myotubularin related protein 7 [Source:HGNC Symbol;Acc:HGNC:7454]
Coordinates
chr4:62728897-62734203:+
Coord C1 exon
chr4:62728897-62729006
Coord A exon
chr4:62731625-62731750
Coord C2 exon
chr4:62734003-62734203
Length
126 bp
Sequences
Splice sites
3' ss Seq
AACTTTTTATGTGTTCTCAGGCT
3' ss Score
7.87
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
TTTGTGAAATGAAATCACCTTCAATGAGTGACTTCCTGTGGGGCCTTGAAAATTCTGGCTGGCTGAAGCATATCAAAGCCATTATGGATGCTGGCATCTTTATCGCAAAG
Seq A exon
GCTGTGGCTGAGGAAGGTGTGAGTGTGCTTGTTCACTGCTCTGATGGCTGGGATAGAACAGCCCAGGTTTGCTCTGTAGCAAGCCTTCTCTTGGATCCGCATTACAGAACTATGAAGGGATTCATG
Seq C2 exon
GTATGGCAATTTAGATGGAGATCCAAAGGAGATATCCCCTGTTATTGACCAGTTCCTCGAGTGTGTCTGGCAGCTAATGGAACAGTTTCCTTGTGCCTTTGAGTTCAATGAGAGATTCTTGATCCACATACAGCACCACATCTATTCCTGCCAGTTTGGTAACTTCCTGTGTAACAGCCAGAAGGAGAGACGAGAGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.5=100)
A:
PF066029=Myotub-related=FE(12.0=100)
C2:
PF066029=Myotub-related=PD(19.2=97.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTCTGGCTGGCTGAAGCA
R:
TCTCGTCTCTCCTTCTGGCTG
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]