GgaINT0077026 @ galGal4
Intron Retention
Gene
ENSGALG00000013641 | MTMR7
Description
myotubularin related protein 7 [Source:HGNC Symbol;Acc:HGNC:7454]
Coordinates
chr4:62728897-62731750:+
Coord C1 exon
chr4:62728897-62729006
Coord A exon
chr4:62729007-62731624
Coord C2 exon
chr4:62731625-62731750
Length
2618 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AACTTTTTATGTGTTCTCAGGCT
3' ss Score
7.87
Exon sequences
Seq C1 exon
TTTGTGAAATGAAATCACCTTCAATGAGTGACTTCCTGTGGGGCCTTGAAAATTCTGGCTGGCTGAAGCATATCAAAGCCATTATGGATGCTGGCATCTTTATCGCAAAG
Seq A exon
GTAAAGTGTGGAACATGAAAACAGAACTTGGACTAACCAGATATAGAAAGTGAGGACCAAATTCTTTGTGGGTGACTTCCATTGTCTTCAGTGAAGTTGTATCTGAAACTAATGTTTCCTGTGATGCCTCACATACGAGGAGAAACAATCTTTAGGTGCTGTTGCATGGACATTTTGATAATAGGGTAAAAACAAGTTTGTGTTATTTTGCACTGAAAATCTCGAATCTACTGTAACCTCTGCTATCCTGTATCTTGTTATTGCCACATGTTTGAATGTCCATATTCAAGACAGACAGGGAACTACTGGAGAGAGTCCAGCGGAGGACCACAGAGATGAACAGGGGCCTGGAGCATCTCCTTTGTGAGGAAAGGCTGAGAGACCTGGGGCTGTTCCTCTTGGAGAAGAGGAGATTGAATGGAGATCTTACCAATGCTTATATATATCTAGTGAATGGGCATTAAGTGGATGGAGCCAGGACAAGGGGCAATGGCACAAAATGGAGCACGGGCAGTTCCATCTGAACATGAAAAAATCTTCTTTACTTCATGAGTGACAGAGCACTGGAACAAGCTGCCCTTCTCTATGACTACTTCTTCACATTATATTTGTCCTAAAGGAATATTAACATTATCCCTTGAGTTATTTAGCAACCACCTAAATTCACCTCCTAAACCAGTACCTGTCAATTACAATGGACAAATTCTCTAGTGACTTCTACTCTTAAATGCTTGGTAACTGATTCAGAGAAAAAGTGCCAACTTTAGTAAAAAATTATTTCTTCTAATCCCACCTCAAGTAATAAAGATATTTATCATCTACTAAAAGTAATTTGAATTTTATTACCTCCATCCTTGAGCAGCATCTTTTACTGGTTCTGTTCTTATTTTTTAAGAATATAAATAAGAACGGAACAGTTCTTCTTAGTACAGACCATTTTATTTACAAGACTTTCCATATATGAATATAAGGACAAACTTAATGGATCTCTCACCTCAGCATCTGCCTGTTTCTCTTGCCTTGTCTCTTCCTGCTCAGCAGTTGTAGTTTCTTACCTGAACACCAGCACATTATTTCTCCCAGCCCTATGAGCTTACAGACATCAAGTTATTTAATTAGCTTTTGCCAGCTTTTTTTTCTCAGTGACTCAGCATTAATGTATGAAAAAATGTGTTCTTTGTCCATATGGTTGCTAGTCTTATGCTTCCTTGGTCATGCATTTTGACTTGTTTGTATTTGCACAGTTCCCAGTTCTCAGTTTTTGGTCTTCTGCCCACATGGGTTCTATTTTAGTAGAATGTTCTTGTCTCTTTAGATAAACATAGATAATTTATTATTATTTCTTGTTCCCTTTTAAGCCCGCATTTAATCTAAATGTTTCTTTTTCTAAGCAATGTCTTTCCTAACCTATTTTATTTCTCTGCTTTCTAAGTATAGTTCTCCTTAGAAATGACGAATACCAAACTCTTTAGAATTTAAAATAACTCTCGGGTTCCCAAAATAATGCAGCATGAGACTCTGGAGAATTTAGTATAATCCCTTCTTTATGCATTTCTCCTGGATTATGTATAAAATAGTTTCTCTCTCCAGATTTATTTACTTTAAAGTTATTGTTACAGTCTTGTTTATTAGATGTGAATGTTCACTGCTGCCACATGCTTTGCCCCAAACCATGACAAGCATGTATTTAATGCAGTATGGTTTGATAATATCCACAATAATATCCTGGCATCAGAGGCAGACATTAGCATTATTGACATACTCATCAAGGAGAGAAATTAGGAGTCATATGGAAATATGGCTGCTCTGTAGCTGCTATGAGTGAGAGCATTAGCAGTAGCTGAATTGGCTTTAAGTAACTGTCCACTCTGAACAACTGATGTATTTTAATTTTCCTGTGATCTCTGTGGTCAGGGTATTCATGTACACAGCAGGCCTTCTGCACTGAGAACTGGTGTAGCTATCTTCCAGATGACTTTGCTGGTATATTTTTGAAAGTGTGCCTATTCTCATCTGAAATACAGGGAAGAGTGCCTATCACATGCTATAAATTAGATTTTTATAATCTTCTCCTTGAAGTTCCCAGATCCAATATTTAGGTCTCACTTGTGTTCACAGAACTGTAAGCTGGTACTGTGATCCAGATCTTCTCCGTCCTGGGTATGGTTAAAGAGTTATTTCTTCCTCTTCTTTTTACATAGCCCGAAAGCATATTTAGTTATTCCACGCAGGTAAAACACCTTCACTATAAGTACTGAAAGTAACCAAAAACCAGAATAGACAACTTGTCAATTGGAAGGACTGCTGCACACATGGGATGGGATTCATTACTCCTTTAGTACAGTCACTGTTGACATGGATCCCATTTCCTCAAGTACTGGTACATCAACAAGTGATGCTGCAGCCACCATGCTGCACAGGATAGGATAATATAAAGACTTTGCAAATGATAGAAATTGTGTTCAACGTCATTCAGAAAGTCTGTGGTGGAGTAAAAAATTGAACGAGTTTTCCCAGTTCCCAAATGAATGCCCTCCCTACTGTGCTGTCTCACTTTTCCTCTCTAACCATTTCCTCTCCGCTGTCTGTGAAATCTCCAACTTTTTATGTGTTCTCAG
Seq C2 exon
GCTGTGGCTGAGGAAGGTGTGAGTGTGCTTGTTCACTGCTCTGATGGCTGGGATAGAACAGCCCAGGTTTGCTCTGTAGCAAGCCTTCTCTTGGATCCGCATTACAGAACTATGAAGGGATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641:ENSGALT00000022188:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.5=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]