MmuINT0102011 @ mm9
Intron Retention
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:41647924-41649423:-
Coord C1 exon
chr8:41649314-41649423
Coord A exon
chr8:41648050-41649313
Coord C2 exon
chr8:41647924-41648049
Length
1264 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
CACAGTGACTGTCATTTCAGGCA
3' ss Score
4.03
Exon sequences
Seq C1 exon
TGTGTGAACTTAAATCTCCCTCTATGAGTGATTTCCTGTGGGGACTGGAGAACTCAGGCTGGCTGAGGCACATCAAAGCCATCATGGATGCAGGGATCTTCATTGCAAAG
Seq A exon
GTTTGTGAAGACAGCAAAAAAGTTACGGGAGTAGACATGAGGCTAGCATAACCTCAGAGCTGTGTTCCTGTCGGCTCTCCTGTATTCACGAGTGGGTAGCAGGCTTTGCTGACCTCAGGTAGTGAACATGATTTTGTGACAGAGTGCAGTGGGCAGATAACTGGGTTAAGAAAGTGGTCAAATGCCAAAATATTTCCAGAATACTCTCTTTCATCAGATTTACCCCTGGATAAAGGACAGACTTTTCTATAGGAGACTGTCCCCTCAGTGATGGGGGCTTAGGTTATAGTCAGTAGATCCTGCTTTTCAGTCATGACTTAAGCAAAGCTAACAGATTCCATTCTACCATTGGAAGAGCCTTGATGGAACGTAAATGTAAACTAGTTTTTTTTCAATATAAAATGTTTAAAGTAAGGTGTCTAATAATTCTATTATGACATTGGGGGTTTCCTATAAATGAATTCCTCTTAGATTTCTGCCTAGAGAGAACCATGACTTTGTGACGGTGATGCTGTTTATTAGCTATTCATCCTTGTTTAGTGCCTGGCATTGTGCTGTGGATGCAGTAGTAAGCAGTATGAAGTCAAGCCTCTTACTTACACGAGTGACACACACACACACACTCACTCTCACTAATGATAAATGCTACATAATCACTGTCTTTCCCAGTGCAAGACAGCTGAAGATGCACATAAGTGAGAACAGATAGAAATTCTTTCATGCTGGGCAATGGTGGCACACGCCTTTAATCGCAGCACTCGGGAGGTAGAGACATGCGGATTTCTTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGGAAAACTAAAAAAGAAAAAGAAAAGAAATTCTTTCATACAGTTCCTGACATAGTCTTTTACCTTCTCTTCATCTGAACATATTACTGGCCCTTTTCTTTTTATCTGCAACTTTATAATTTGATAAATTAGAATTTATGTACATTTCCATTTTAGAAGAGGCCTGTAGAAACCCCAGAATTTCAGTAAGATTTGTGTTGCAGGTGAGGTGGGGACAGGTCATAAAGGTGTGTTACATAGTTCATATAGTAGTACATTTGTTAATTTGTGGTGATTTGAATGTTGGCTTTGAAATGTAATGAGAAAGAAAAACTCTCTGCTAGTTCTAAGAAGGCTGGGCCTAAGTGCTGATTGTGAGTTCTCTTAGTCTGTAGCCAAACCTAATGGTCACAGTGACTGTCATTTCAG
Seq C2 exon
GCAGTTTCAGAGGAAGGGGCAAGTGTGCTTGTTCACTGTTCTGACGGCTGGGACAGAACGGCCCAGGTGTGCTCGGTGGCTAGCCTGCTGCTGGACCCTTACTACCGGACTCTGAAAGGATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431-Mtmr7:NM_001040699:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.5=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGAACTTAAATCTCCCTCT
R:
TGAATCCTTTCAGAGTCCGGT
Band lengths:
234-1498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: