RnoINT0095416 @ rn6
Intron Retention
Gene
ENSRNOG00000011420 | Mtmr7
Description
myotubularin related protein 7 [Source:RGD Symbol;Acc:1306608]
Coordinates
chr16:54843063-54844367:+
Coord C1 exon
chr16:54843063-54843172
Coord A exon
chr16:54843173-54844241
Coord C2 exon
chr16:54844242-54844367
Length
1069 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
CACAGTGATTGTCATTTCAGGCA
3' ss Score
4.68
Exon sequences
Seq C1 exon
TATGTGAACTTAAATCTCCATCCATGAGTGATTTCCTATGGGGGCTCGAGAACTCAGGCTGGCTGAGGCATATCAAAGCCATCATGGATGCAGGGATCTTCATTGCAAAG
Seq A exon
GTTTGTGAAGGCACAGGAAAGAGTAAAGGGGTTAGACACAAAGCTAGTATAACCTCAGAGCATGGCTCTCCTGTATTCACATATGGGTAGCAGGCTTTGCTGACCTCATGTGGTGAACGTGATTTTGTGAAAGAGTGCAGTGTGTAGATAACTGTGTGTTAACACAGTGGTCGAATGCTAAAATATTTCTGGAATATTCTTTCATCAGATTTAATCTTGGATAAAGGAAAGAATTTTCTGTAGGAGACTGTACAACTCCATGGGAGTCACCTCAGTGAGAGGGGCTTAGCTTATATTCAGTAGATCCTGCTTTTCAGTCATGACTTAGGCAAATGCTAACAGATTCTATTCTGCCATTGGAAGGATCTTGCTGGAACTTAAATGTAAACTGTGCTTTTTTAAATATAAAATGTTTTTATGTAAAGTGTTTAATAATTCTATTATGATATTGGCTGTTTTCTATAAATAAATTTCTTAGATTTCCGCCTAAAGATAACCATGCCTTTGTGGTAGTGATGCCATTTATTAGCTATTTACTGTTGCTTAGTACCTGCTATGGTGCTGTGGTTGTGGTAGTAAGCAGTATGAAGTCAAGTCTCTTACAGAAGTGACACATACTCACACACATAAAAGTATAATTTCAGTTACTGATAAATTTCCCAGTGCAAGGCAGCAAAAGATGCATACAGTTCCTGATATAATCTTTACCTTTTCTTCTTCCTCTGAACGTATTACTTGGCCCTCTTTTTATCTGTAACTTCATAATTTGATAAATTAGAATTTATGTACCTTTCCTTTTTAGAAAAGGCCTGTAGCAACCCCAGAATTTCAGGAAGGCGTAACTTAGGTTGCAGGTGAGCTGGGGACAGGTCATGAAGGTGTGTTGCATAGTGCATAAACTTGTATTCAGTACATTTGTTAATTCGTGGTGATTTGAATGTTGACTTTTATATGTAATGAGAAAGAAAGAAAAGCTTTGACCACTAGTTCTAAGAAGGCTGGGCTGTGCTAATTCCAAGATCCCTTAGTCTGTAGCCAAACCTAATAGTCACAGTGATTGTCATTTCAG
Seq C2 exon
GCAGTTTCAGAGGAAGGGACAAGTGTGCTTGTCCACTGTTCTGACGGTTGGGACAGAACGGCCCAGGTGTGCTCGGTGGCAAGCCTGCTGCTGGACCCTTACTATCGGACTCTGAAAGGATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011420:ENSRNOT00000065327:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.5=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAACTTAAATCTCCATCCATGA
R:
CATGAATCCTTTCAGAGTCCGA
Band lengths:
234-1303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]