GgaINT0077027 @ galGal4
Intron Retention
Gene
ENSGALG00000013641 | MTMR7
Description
myotubularin related protein 7 [Source:HGNC Symbol;Acc:HGNC:7454]
Coordinates
chr4:62731625-62732526:+
Coord C1 exon
chr4:62731625-62731750
Coord A exon
chr4:62731751-62732476
Coord C2 exon
chr4:62732477-62732526
Length
726 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
AGGCAATATTCTCATTTTAGGTT
3' ss Score
6.87
Exon sequences
Seq C1 exon
GCTGTGGCTGAGGAAGGTGTGAGTGTGCTTGTTCACTGCTCTGATGGCTGGGATAGAACAGCCCAGGTTTGCTCTGTAGCAAGCCTTCTCTTGGATCCGCATTACAGAACTATGAAGGGATTCATG
Seq A exon
GTAAGCAGGTTCTCTTTCACAGAGTAAATGAAAATATTATGGTATCATTTTAGAGAACAGTAAGATGAATAACTTTGTTTCTAGTGGAAAATAAAGTTTCCTTAAGTGTGCCTTTTCAGCTGGGTACATGTCATGGTTTTGTACTCCATATTCATCTATTTTTTTTTTCCCTAACCTTGACCAAAAAACTCTTGAAGCCCTAAGGATTTTTTTTTTTTTGGTGCAAGCAAGAGTTTGTATTTAATTTCAGGCATTGTGAGGTTGTGAGTGTCAAAAGTGTGTGCTCCCTAGACACTAGATTGCAATGAATGAGCTTGTTGAAAAATCCATTCCCTTTCAAAGCAAACCAGCACTAGTGGTTGAGGTAATGGGCACATATTAAAAAGACATTTGAAACATTGGTAGGTTCTATTTTTAGAAAATGATGAATTAAACTAATTTAAGTTATGCCAAAATACTGGCATCCTACCTATATCAGTCAAGAATGCTACTTTCTCTTGAGCTGGCAGCGGTGCACATTGCTCGTTACTTTTCTGAATATTTTTCTTACTAAAAATCACTTGAGATTCCAGTACTGCTTGCTTACATCATATCTGGCTCATCGCTTTTCTGCTTATTCTGAAAACTACCTGGGATTCTAATACTGCTTGTTTATACCATTCTTCTGCCTGCTTCAACATGTGTCAACTCTGCTCCACTACACTGAAGGCAATATTCTCATTTTAG
Seq C2 exon
GTTTTAATTGAAAAAGACTGGGTTTCCTTTGGTCACAAATTTAACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641:ENSGALT00000022188:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.0=100)
A:
NA
C2:
PF066029=Myotub-related=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]