MmuINT0102012 @ mm10
Intron Retention
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:40560857-40562695:-
Coord C1 exon
chr8:40562570-40562695
Coord A exon
chr8:40560907-40562569
Coord C2 exon
chr8:40560857-40560906
Length
1663 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTGTGTGTGTGTATGTGTAGGTA
3' ss Score
8.06
Exon sequences
Seq C1 exon
GCAGTTTCAGAGGAAGGGGCAAGTGTGCTTGTTCACTGTTCTGACGGCTGGGACAGAACGGCCCAGGTGTGCTCGGTGGCTAGCCTGCTGCTGGACCCTTACTACCGGACTCTGAAAGGATTCATG
Seq A exon
GTGAGTCTGGCGAGAACCTTCCTGACTCAGGCAGACCCTTGACCAGCAGTGCACTTCATTTTTAGAATCTTGTCACCTTTTTTTTGTCTAATCAGTACTGTTCTTCTCTTAGTACATCAGCAAGATTGATTAAAGGGGAGAAATTGAAACAGGCTTGAAATTCATCAATATTGAGGATGTTGAAACTAGTTTAGCTCAATGCTCCTAGATGTGAATTCAGACACAATTTAAAATACATAAATATATAAATATAAAATAAAAATATATAAATATAAAATATATTAAAAAGCTTGGAAAATAATGGTTTGTATACATAATTTGTTCCTAAGTATCTCAAGTTGGAGTAGTGTATGACTATATCAGCAGAAAACATGAAAAAAAATTGGAAAAGTTCAGTTTTGTGCATACAAATAGTTCTTGGAAGGAAAAAAAAAGAAACAACATTCACTCCTAAGTTCCTATTTTTTAAGTGCTCCCTGACAGAACTGCATGATAGTATTGAATTTCAGTGTTTTCTGTCTTTGCTGTAATTGGGAACACATCTTGAGAGCTGGAACCTTTTGGGTGTACATCACAATTTGACTTTGACTTTAGCTGCAGTAGTCTGGCATGTTAGGAATGAGCTGGCAGAAGGCCTTCAAAAGACTGTAGGGGCTGTGTGGTGACTAGGTGACCTGGTACCTGCCTCTTGACTATAAGTTGATAGAAAGTACTTTGGTGGACCCTGAATCTGCTTGGGACAGAGGCTCACAGAAACTACACACACACAAAAATCTGTATCACTGGACCAGTTTTGTGAGCCATGTCAGCTGTTCCCCTGGGGAGAAGGCCGAAGAGGCAGGCCACTTCTTCAGAACATACTACTTTAGACAAATGAGATCTGAATGTCCCTGCCTCTGTGGTGTATTCCTGAGCAGACTCGATGCCTTTGTGTAGTTGAGAGCATCAAATGTCCTATGTACATAACGCCATGAGTCTTTTTCTTTCCTACACAACAACCCCCCACATTAAGCCATTACACTTATAAAAGGCATTTGGAGGGCAGATGTCAGTTCTAAAGAGTGATATTCATGAAATTATTCCATAGTTTCATCAGCAATCCATGTTGGTTAACAGATGAGGTTAAGAATAGAGAGACTAGGACATGAAGTCCCTGAGACCTGACTTGTGGAGAACATTTCATCTTTATTCCCCTTCTCTAGAATGGGGGGGAATGATGGCTGTCAAACCAGCAAGATGACAGCACAGAGCCTGGCACACGGGAGGACTCTGGGTGGCTACTGCAGTCTCACACATGCCTTCTAATTTTCATAGAGAAGGCCTTCATTTTGGATATATTCTGGATAATGTTCTTTTAAGATCTATTTACTATTGTTTTGTATAAGAGGTTTTGCTTGCAAGTATGTATGTGTGCACCATGTGCGTGTGGGCCTGGAATGATGGACAGTTGTGAGGAGCCATACGGGTGCTAGGGCCTTTGTCCTCTGAGGAACACCACGTGCTCTTGCACAAATGAACCCCTCCTGTGGGAGAACATATTCTCAGTCGTGTGGGAGTTTCCCTTGCTCCCATGAACTCAGTCCTTTTTTATTAGTTTGCTTCTCTAATGTTTCTCTTACAGGCTTCCATATTTTATTCTTTTTTTGTGTGTGTGTATGTGTAG
Seq C2 exon
GTATTAATTGAAAAGGACTGGATTTCCTTCGGACATAAATTTAATCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431:ENSMUST00000048898:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.0=100)
A:
NA
C2:
PF066029=Myotub-related=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types