BtaEX6106721 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010372 | MTMR7
Description
Bos taurus myotubularin related protein 7 (MTMR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001075641]
Coordinates
chr27:18992877-19004518:+
Coord C1 exon
chr27:18992877-18993009
Coord A exon
chr27:19002616-19002725
Coord C2 exon
chr27:19004393-19004518
Length
110 bp
Sequences
Splice sites
3' ss Seq
TAACACAGTTTATCTTGCAGTGT
3' ss Score
5.08
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
CTTAATGCGATGGCAAATCGTGCTGCAGGGAAAGGCTATGAGAACGAAGACAATTATTCCAATATCAAGTTTCAGTTTATCGGGATAGAGAACATCCATGTCATGAGGAACAGTCTGCAGAAAATGCTGGAAG
Seq A exon
TGTGTGAACTTAAATCTCCCTCCATGAGTGACTTTCTGTGGGGACTGGAGAACTCTGGCTGGTTGAGGCACATTAAGGCCATCATGGATGCAGGAATCTTCATTGCAAAG
Seq C2 exon
GCAGTTTCTGAGGAAGGGGCCAGTGTGCTTGTGCACTGCTCTGATGGCTGGGACAGGACCGCTCAGGTGTGCTCGGTGGCCAGCCTCCTTCTGGAACCTCACTACCGGACTCTGAAGGGCTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010372-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.8=100)
A:
PF066029=Myotub-related=FE(10.5=100)
C2:
PF066029=Myotub-related=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCGTGCTGCAGGGAAAGG
R:
GAAGCCCTTCAGAGTCCGGTA
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]