GgaEX1037507 @ galGal4
Exon Skipping
Gene
ENSGALG00000007590 | MTMR8
Description
myotubularin-related protein 8 [Source:RefSeq peptide;Acc:NP_001012717]
Coordinates
chr4:11595898-11598999:+
Coord C1 exon
chr4:11595898-11596023
Coord A exon
chr4:11597299-11597348
Coord C2 exon
chr4:11598799-11598999
Length
50 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCTTTGAAAATGAAGGTC
3' ss Score
2.84
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCTGTGAAAGATGAAAAGGCCAGTGTGTTGGTGCACTGCTCTGATGGGTGGGACCGCACAGCACAGGTCTGCTCCCTGGCTAGCCTCCTTTTAGATCCGTTTTATAGGACTTTTAAAGGCTTCATG
Seq A exon
GTCCTTATAGAAAAGGAGTGGATTGCAATGGGCCATAAGTTTTCACACAG
Seq C2 exon
GTGTGGCCATTTGGATGGTGACCCAAAGGAAGTGTCCCCTGTCTTCACTCAGTTCATTGAGTGCGTCTGGCAGCTCATGCAGCAGTTCCCTTGTACGTTTGAGTTTAATGAACATTTCCTTCTGGAAATCCATGATCATGTCTATTCCTGCCAGTTTGGAAACTTCCTTGGGACCTGCCATAAGGAGCGTGAAGATCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007590-'15-14,'15-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.0=100)
A:
PF066029=Myotub-related=FE(4.7=100)
C2:
PF066029=Myotub-related=PD(19.2=97.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGTGCACTGCTCTGATG
R:
GGACACTTCCTTTGGGTCACC
Band lengths:
138-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]