RnoEX0056443 @ rn6
Exon Skipping
Gene
ENSRNOG00000012918 | Mtmr6
Description
myotubularin related protein 6 [Source:RGD Symbol;Acc:1305378]
Coordinates
chr15:40588386-40591719:+
Coord C1 exon
chr15:40588386-40588511
Coord A exon
chr15:40591067-40591116
Coord C2 exon
chr15:40591519-40591719
Length
50 bp
Sequences
Splice sites
3' ss Seq
ATTTTGCTCTTTCTCACTAGGTT
3' ss Score
11.08
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCAATAGTGGTTGAAAATGCAAGTGTGCTGGTACACTGTTCGGATGGGTGGGACAGGACCTCCCAAGTGTGTTCCCTTGGTTCGCTCTTGTTGGATTCCTACTACAGGACAATGAAAGGATTCATG
Seq A exon
GTTTTAATAGAAAAAGATTGGATATCATTTGGGCATAAATTTTCAGAGAG
Seq C2 exon
GTGTGGCCATTTGGATGGTGACCCAAAGGAAGTCTCACCAGTGTTTACTCAGTTCTTGGAGTGTGTATGGCATCTGACTGAGCAGTTCCCACAAGCCTTTGAGTTCAACGAAGCGTTTCTTCTTCAGATCCATGAGCACATTCACTCATGCCAATTTGGGAACTTCCTTGGCAACTGTCAGAAGGAAAGAGAGGAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012918-'17-16,'17-15,19-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.8=100)
A:
PF066029=Myotub-related=FE(4.2=100)
C2:
PF066029=Myotub-related=PD(17.3=97.1),PF097894=DUF2353=PU(14.2=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCTTGGTTCGCTCTTGT
R:
GGAACTGCTCAGTCAGATGCC
Band lengths:
145-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]