DreEX6095188 @ danRer10
Exon Skipping
Gene
ENSDARG00000016794 | mtmr6
Description
myotubularin related protein 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5557]
Coordinates
chr24:24906824-24907692:+
Coord C1 exon
chr24:24906824-24906949
Coord A exon
chr24:24907030-24907079
Coord C2 exon
chr24:24907492-24907692
Length
50 bp
Sequences
Splice sites
3' ss Seq
TATCTTCCTCTCGTTCTCAGGTA
3' ss Score
11.85
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GCTGTGAGTGTGGAGGGCGCCAGTGTCCTGGTGCACTGCTCTGATGGATGGGATCGGACAGCTCAGGTCTGCGCTTTAGGCTCTCTGCTGATGGATCCATACTATCGCACCATCAAAGGTTTCATG
Seq A exon
GTACTCATTGAAAAAGACTGGATTTCCTTTGGACACAAGTTCGCAGACAG
Seq C2 exon
GTGTGATCAGCTGGACCCTGATCCTAAAGAAGTATCCCCCATCTTCACACAATTCCTTGAGTGTGTTTGGCAGCTGACGGAACAGTTTCCTCAGGCTTTTGAGTTTAGCGAGTGGTTTCTCATTCAGATCCACGAGCATATCCATTCCTGCCAGTTTGGCAACTTCCTGGGTAACAGCCAGCGGCAGAGGGAAGACCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016794-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.0=100)
A:
PF066029=Myotub-related=FE(4.7=100)
C2:
PF066029=Myotub-related=PD(19.2=97.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCGCTTTAGGCTCTCTG
R:
TCAGCTGCCAAACACACTCAA
Band lengths:
137-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]