BtaEX6056544 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003116 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr12:34190203-34193507:+
Coord C1 exon
chr12:34190203-34190328
Coord A exon
chr12:34192825-34192874
Coord C2 exon
chr12:34193307-34193507
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTTTACTTTTTCTCATTAAGGTT
3' ss Score
10
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GCAATCGCGGCTGAGAGTGCGAGCGTGCTGGTGCACTGCTCTGACGGCTGGGACAGGACCTCACAGGTCTGCTCCCTGGGCTCTCTCCTGCTGGATCCCTACTACAGGACGATCAGAGGGTTCATG
Seq A exon
GTTTTAATAGAAAAAGATTGGATCTCCTTTGGACATAAGTTTTCAGAGAG
Seq C2 exon
GTGTGGCCATTTGGATGGTGACCCAAAGGAAGTCTCGCCGGTGTTTACTCAGTTCTTGGAGTGTGTGTGGCATTTGACCGAACAGTTTCCACAAGCCTTCGAGTTCAATGAAGCGTTTCTTCTTCAGATCCATGAACATATCCATTCATGCCAGTTTGGAAACTTTATTGGGAATTGTCAGAAGGAAAGAGAAGAACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003116-'16-11,'16-10,18-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.0=100)
A:
PF066029=Myotub-related=FE(4.7=100)
C2:
PF066029=Myotub-related=PD(19.2=97.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCCTGCTGGATCCCTAC
R:
AGGCTTGTGGAAACTGTTCGG
Band lengths:
143-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]