GgaEX1038118 @ galGal4
Exon Skipping
Gene
ENSGALG00000007647 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr2:16207491-16210207:-
Coord C1 exon
chr2:16210078-16210207
Coord A exon
chr2:16209784-16209954
Coord C2 exon
chr2:16207491-16207570
Length
171 bp
Sequences
Splice sites
3' ss Seq
GCTTAACTTTCCAACCCTAGAAT
3' ss Score
6.76
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTTCTGTATAATGCAAGTGGATTCCTGGCCAAAAATAGAGATACTCTGCCAGCTGATATTGTGCTGCTTCTGCGATCATCTGAGAACAATCTGATACGACAGTTGGTAACACATCCTCTTACAAAAACAG
Seq A exon
AATCTATACAGAATGGAGCCCCTGCCATCTCAAGCTTCAGGGGAGGGACTGGTCTGGTCAAGTGCGAAGGAAGTGGTAGAGGCTTCTTTCAGGGTCCCCTCTTCAGGTTAGGGGCTCGGGACAGGGAGTGGAGTACATCTCTTGAGTTGAGGACTGAACAAAATGGATCAG
Seq C2 exon
GTAACCTGGCACACAGTAAAAGCAAAACTACAATCAGTTACCAGATGTGGACCCCCCAGAAATCAATCAGTCGTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.276 C2=0.296
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.1=100)
A:
PF0006316=Myosin_head=FE(7.5=100)
C2:
PF0006316=Myosin_head=FE(3.7=100)
Main Inclusion Isoform:
ENSGALT00000012375fB9710
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGTATAATGCAAGTGGATTCCT
R:
CTTTGTACGACTGATTGATTTCTGGG
Band lengths:
210-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]