GgaINT0103359 @ galGal4
Intron Retention
Gene
ENSGALG00000007647 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr2:16207491-16210207:-
Coord C1 exon
chr2:16210078-16210207
Coord A exon
chr2:16207571-16210077
Coord C2 exon
chr2:16207491-16207570
Length
2507 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
ATTCTTTGATCTTCCCATAGGTA
3' ss Score
10.18
Exon sequences
Seq C1 exon
GTTCTGTATAATGCAAGTGGATTCCTGGCCAAAAATAGAGATACTCTGCCAGCTGATATTGTGCTGCTTCTGCGATCATCTGAGAACAATCTGATACGACAGTTGGTAACACATCCTCTTACAAAAACAG
Seq A exon
GTATTGCTATTGTGGTAATTTTCCTACTCTCCTTCTCTAGCCTTCATGCTGACCACAGCTGGATTTCATATGACCATTTATTGATGACATTATACACTTTGTGGCTTAACTTTCCAACCCTAGAATCTATACAGAATGGAGCCCCTGCCATCTCAAGCTTCAGGGGAGGGACTGGTCTGGTCAAGTGCGAAGGAAGTGGTAGAGGCTTCTTTCAGGGTCCCCTCTTCAGGTTAGGGGCTCGGGACAGGGAGTGGAGTACATCTCTTGAGTTGAGGACTGAACAAAATGGATCAGGTAAGTCACTGGCCTTTTTTGGGCAGGGCATATGTAAGTTGTCTGTTTTGTCTCAGTGCAACTTTTTCTCTAAAGTAGTAGAGAACCCAGGTGGGTTCCTAACCTCTGCTGCAAAGAAAGAGGAGACGCTGTTTCCCAAGTCTTAGTCCATTATAGTAGTTAACTGTCGAGGTCCTAAGAGTGAACTCTTCATCGGAGAGTTTACAAGAGGTTGAAGGAATGTAACTGGCTCTACAGAAATTACTTCTAAGTAAAGTTGCACCTTAGTTGAAGCATGTCCTTTGTACAGTGTCTTACTTGTCTTTTTTTGTGATAGGTAAGTCTTCTTATCCTTACAATCAGAAAATCTAGGTGGCAAGCCTCATTTGTGTCTTGTCTTTAGGTTTTACCATGAAGTTAGTGGGTAGCTGCTGTTATGTGTACTATAGACAGGCAGGGGTTACTTGTTATTGTGTTGTATTTTTCTCTGTGTGAGGGCACTGATGCTGTACAATAAGTATTTTACAAAAGTACTTTCTTGTACCACTACATAGGAGAACAGGAAAGCTAAATTGAAAAAGCCTAATGGAAATTTCTCCAAAATGTTATCATAACTTACAGAAGCTAAGGTTTTGGCAAAGTTCCTGTTACTCACGAAGGAAGCTTTGCTGGTGGAATGCAAAATTTAGTCTTGTAAGTCTATTTTAGGTCAGTATTGCTGGGAAAGCACAGAGCACATTGTCCTCTGAACATTTTAGCTATAATTTCTGTAGAGCCAAGGTCAGGGCCCAAATGGTACCAAGAACTTTTGTAATGTTTTGCAATAATTACTCTGAAGATTATTTTAGTTTTTTTGTTAATCAACATCAAATGTACCTTTTGAAACTGACCTAAACAAGCCAGCTCTAAAGAACTAAAAGTTAGTTTTCCAGTCTAAGTCATTCACACAGAGTCAGTGGAAACACTGAGGTATATCCAGAGTCCAACCGATCCTGTCCATCTCGAGTGTTTCTCTTAGGATGAGACAAATTTCTTCTGAAGGTCTCTCTCTTCACTGAATGCAGTGGAGATCCAGTAGACACCTCAATTCCAGATAGCTAACGTTAGATGTGAGTAATCTTCTCTCTTTCCTTTCTACCCAGTGATATTTAGCTAAGCACAGGGGATTTTTGCACTCGATACCATCACATAATCCATGATGCATTAGCTGGGCATACCATTTAGTTGCAGTTTTTTATCCAACTTTTATGTAACTCTTATCCTTCTCTTACTCATAGTAGCTGAGCACAGAGAGATTACAAGTTCTCACAGTGTGTAGCAAGATTTCAGAGGTGTTATATTAATAGCAGAAGCAATGGCAACATGCAGCACTGGGTGGGATTTATCAACATAAATCAACATGGCGTAAAGTCCAGTAGTATTTTCATTATTTCTTTAGAAGGTCAGTGTCTATATAAACCACTCCTATGCGCTTTATCCTTCAAGTCATTATAATAAGGGTAGTTTTTGGCTAAGAATTCCAAGGTTGCAGTCTTAAGACTATGTCTATGATAGTAAATAAAGCAGGGCCAGAGAACAGTAGACAAAACACTGCCACAGGATTGTCCATTATGATTAATTTCTAGCATGTCACCCTGGGACAGTTTTGGTCAGTGTCAGCTAGTGTTCTCCCAGAAACACACAGGCACACTTCACAAGAAAGTACAAATTAGCAATGGTTTCCAGCAAGCTCTGAAGGGGGGTGCAACTGTATTTTTACCAGTGGAGTGGCAGAGTGGAGAAGTATAGAGTTTAGCTGTATAGACTTGAGTCATGCCATGTCATCTGGCCTCAGAGCTAGAGAAGGGTGCTGGCATATAATTTTAACTTATATATATGTAGCCTTAGAACTAGGATAGCAAAATAGCCCCCTTAGGGTAAAAGTTCATGGATACCATATCTTTTTCACCCTCTGCAATGTTCTGTTTGTTTGTTTGTTTGTTTTTGTTTTTGTTTTTTGCTCCAGTAGGTGATATAATTGTTGAAGGCAGAAAATTCAGTCCTGTTCCATCTTCATGCAGTTTCTTCAGGGCTTGTTCTACCTCAAGGGTGCAAAGAGAAATGACAGCATACACAGAAAAAGTCGACATCTTTTTTAATCATATTGTTACACTGAATAAGGTGGTTCAACATAGTTTTTAGTTTAGATGAGATTTAAGCATTTTGGTAGGTTGCATTCTTTGATCTTCCCATAG
Seq C2 exon
GTAACCTGGCACACAGTAAAAGCAAAACTACAATCAGTTACCAGATGTGGACCCCCCAGAAATCAATCAGTCGTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647:ENSGALT00000012375:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.296
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]