RnoINT0097171 @ rn6
Intron Retention
Gene
ENSRNOG00000018478 | Myo3a
Description
myosin IIIA [Source:RGD Symbol;Acc:1560083]
Coordinates
chr17:89113489-89115432:+
Coord C1 exon
chr17:89113489-89113618
Coord A exon
chr17:89113619-89115352
Coord C2 exon
chr17:89115353-89115432
Length
1734 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTTATCTACATTCCCATAGGTA
3' ss Score
9.93
Exon sequences
Seq C1 exon
GTCCTCTATAGTGCTAGTGGGTTCTTGGCTAAAAACAGAGACACTCTCCCAACTGATATTGTGTTGCTTTTGAGGTCATCAGAAAACAGTGTAATTCGGCAGCTTGTCAACCACCCTCTGACCAAAACAG
Seq A exon
GTAAGACAGTTGATGTTCGGAAAAGTTCCTCTAAGCCCCATACAGTAGCTTCTATTGATGTGATTTATTTGTGACCATCGTCCTCAATATTCTGTGTGTGTTTATTTTTCAATTCACAAATATCCACTTATTCCTAACCTAAGAGAGGCAAAAAAGTAATATAAAGAAGCAAGGTTTTTATAAAGAAAAGTATATAACAACCTCACCAGAAAATACAGAAGAGTTCGCTCTCCACAAAAGAAAGCTTGCTGTTTTCTGGAACAGAGAGCTAGAGATGGCCCGTGGTGTTGGCAAGATCTCTATTTATTAAATTCATGTCATCCTGCCCCTTACTCCTCTCCTTATTCATTCTCACTTTTATTAATTGTGGGAAATACCTGGTTCAAGCTTTTCACATTGTAGTTTAAAACACTTCTATAAACTTTTTAGTAGTTTTATTGATGTATAACTGATATATTTAGCCAATGAAATTGGATGTTTTTGCATATGTAAAGACCCTATATATACATCCCCATAACTAATAGAGAGTTTATTGATCATACACATGATCTCCTTCATAGCCCCTGCGATCTCTCCTCCCCTCCCCAACCCTTCTGTGACTGTCTAAACACCATTTGTTGAAAACATTATTCTCCCTCCCTTGAATTCCTTCCATATCCTCAAACATGTACGGAAACGTCTTGTTCTGGACCCTTTGCATGTCATCTGCATGGTCATATTTTACTTAAATACTTAAGTAATTAAGCCTTATTTAAGTATTGAAACTACAGAATATTGGTAGAATAGCACCCCAAGTAAGAACGATGGCTGTGATTCAATTTGCTGACTTTTACAACCTTCATTGCTTCACTGCCTTGAATGGTACAGAGCACACACCTGAAGGTTAAGACTGAAAGTTCATATTGACTTCACTCACATTTGATTTGCTAAAAGCACTTCATGTGACTTTAGAGCTCACTGTGAAGCCCAGCTTGAATTAGAAAAAAAACTCAGAAGCTACCTATCACACACACAAGTACAAACACGCACACATGCACATGCGTGCACACACACACACACACACACACACACACACCTTGAATGCAAAGTAAGTTCATCTTTCATCATAATCTGCCCGTCTCTTCTCATAATTGAGAGGAAAGCTGTCAGTGACCTCTATCTTTCCCATTAGATCATGAGGAGGTTGGGTTTTTCTTTCTTTTTCTGAATTTGGGGTGTGTGGTAGTTGAGTGTGGTAGTACATGTCTGTGCCACTAGAAATCAAGAGACTGAAGCAGGAGTATAAGGTCATTCTGGACTACATAGCAGGATCTTCTCAAAAAAGATGAAGAGCAAGAGGAAGAGGAACAGGAAGGGGAGGAGGGAAGAGAGGAAGAGGGAGAGGAGGAGGAAACAAAAGCAAAAACAGGAAAAGACTCATTATAGCCTGTCTGCAGGGGCATGTGCCTTTCATTCTAGCATTCATGAGGTAGAGGCAGGTAGATCTCTGAGAAGTTGAAGCCAGCCTGGTCTACAATGTGAGGTCCAGGATAGTCACGGCTACACAGAGAAAGCCTGTCTGGAAAAACAAAACAGATAAAATTATTTTTCATGTAATTCCCTTTATCCTTATTTGAATAAATAAGTAACCAAGCTTCTGGGTCTTAACATGTTCAGAATACTTTAAATAAGTGGAAAATTGTCCAGCCGCTAAGGATTCTAAAAGACAAATTAATGTTATCTACATTCCCATAG
Seq C2 exon
GTAATTTGCCACTGTCTAAAACTAAAAATATAGTAAACTATCAGATGCAAAATTCAGAAAAATCTACAAACCTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018478:ENSRNOT00000025053:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.481
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCTATAGTGCTAGTGGGT
R:
TGTTCAGGTTTGTAGATTTTTCTGA
Band lengths:
208-1942
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]