GgaEX1038121 @ galGal4
Exon Skipping
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17867275-17869558:-
Coord C1 exon
chr7:17869454-17869558
Coord A exon
chr7:17867876-17867973
Coord C2 exon
chr7:17867275-17867358
Length
98 bp
Sequences
Splice sites
3' ss Seq
TATTTTTCTGAAATGTTTAGGTT
3' ss Score
6.95
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TTCTCCAAGCTTTACCATGGTATGAAGCGCTCATCCAATCCCCCCCACATATTTGCCTCTGCAGATGCTGCCTACCAAAGTATGGTGACATTCAGCAAAGATCAG
Seq A exon
GTTTGTTGTTTTAATCTGAATATCAGCATCATCTACATGATGATCTCTGTACAGCAACAAACCTTATGATAGTTTTCAGTACCAGGAGCAGAATTTTG
Seq C2 exon
TGCATTATCATCAGTGGGGAAAGTGGTGCTGGAAAGACAGAAAGTGCCCATTTGATCGTCCAACATTTGACCTTCTTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602-'27-24,'27-23,28-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(37.4=100)
A:
PF0006316=Myosin_head=PD(4.4=17.4)
C2:
PF0006316=Myosin_head=FE(3.8=100)
Main Inclusion Isoform:
ENSGALT00000015648fB9712
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGGTATGAAGCGCTCAT
R:
CCAAGAAGGTCAAATGTTGGACG
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]