GgaINT0045783 @ galGal4
Intron Retention
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17867275-17869558:-
Coord C1 exon
chr7:17869454-17869558
Coord A exon
chr7:17867359-17869453
Coord C2 exon
chr7:17867275-17867358
Length
2095 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGTTTTGTTTGTATGTTCAGTGC
3' ss Score
6.94
Exon sequences
Seq C1 exon
TTCTCCAAGCTTTACCATGGTATGAAGCGCTCATCCAATCCCCCCCACATATTTGCCTCTGCAGATGCTGCCTACCAAAGTATGGTGACATTCAGCAAAGATCAG
Seq A exon
GTAAAATTATTAATTTTGTTTTAGATTTCACATAAATCATAGTGCCAATTTGCTATGGATGTAGCTAATGTTATGTTGTGCTCTGAGATTTTTTTCTGTAAGCCTTTAATTCCTGTATACGAAAACTAGCAAAATCTAGTTTTTCGGGACTTTTGAAGAGGACATAGCAGCATAAAAGATCATATGCAAGGGTCAATTAGAAGTGTCACCTAACCTTATAGTTTCCTGGACACCCATGAAGTGCTGGCAGTTGACACCAGTCACAGGCTGTTGCAATATGCTTTGATTCTAGCCTGTCTTGCTCTAGATATTGTAATCATTTACACCTGTGTAAAATAGGGGAGTCTCAATACTTCAGCTGGTTAACTAAGTTTGAACTGCTCTTCCATTGCATAAAGTAGAAAGCAATGTAGCAAGCAAGGAAGGAATGTAACGAGTATGCACATCTTGCAGTTATTTTAATGAAAATGAAATATTTTGCTGCAGAAGTTAGATTCCTTTTTGTTACATTCTTAAAATTGTAATTTTGCACTCTTTCTAACATGATGTGTTGTATGTACATGAGTACTGGGGCCTAATAATTATATATTGTTATCTGGAGGAAAAAAAAATCAATTTTGTCATCAGCACATGAGGCTAACTTTGTAGATTTTTAATATTATATGTCCTTCCTATCTTCTTAGGAAGTAATTTGCATTTAGATCTAAATCTTTATGCAAAGATAGCTAATAATTACTCGTAGGCATCCAGGCATGCCTGCTAGCTTATATAGTTTCCTATTTGCAATAGTTTTTATCTCCATTAACTGACCATTTATGCAGGTTTGTCAGGTAAAGATGCACTAGATGCCTGGTGTAGCTAGACAAAAAATGTATTTATTCTGTTTATCCATTCAGCCTTCCCTTGTATTTTCTTTTGAAGCCTGAAAATTGACTACAGGTCTAATGTTTCTGGGGAATCTCAAGTCATGTTGAGTCATGCAGGGGCTTTAAATTGTATAAACTGTTGTATGTGACTCGTCTGCTAAGGCAGATTAAGACAATTTCAGATAACACAAACCTATAAATACATTGCTGTTTTATTTGTTACCAAGAAGCAGAAAAATATTTGATTAAAAAAAAAAAAAGCTGAAATTCCTCCGTATATTCCAGGCTGGAGAGGGAATAATGGATAATCTTTCTCTAGGAGTGTCAAAAATGTTGTCTGGACAACAGTTATCCCTTTCACACCTTCACAAAGCTTAGTTCTGTATCAGTCATCACTGTATGAAGTATTCTAAGACCTTGTCTCTTTTCCCAGCAAAATCTTTTATGTTTACTGTGTACTTCAAGTAATTTCAAGCTAATCTCTGAGTTTGTAAGCCTTTGGAAAACCTATAAAACATTGTGTGTTATATACAGTCTGCCAAATGAAGAATAATATGGACATGTTCTCCCAGAATCACTCAATGAACATATGCATATTTTTCTGAAATGTTTAGGTTTGTTGTTTTAATCTGAATATCAGCATCATCTACATGATGATCTCTGTACAGCAACAAACCTTATGATAGTTTTCAGTACCAGGAGCAGAATTTTGGTGAGTGTATTAAATACAGCTTTACCTTGTTTTTTTCATTAATTTATATGAACTCAATGAAATGGGCTCAGATGCACTGATAATTACGTCACGTGAACTAGCAGTGGAAATCTTTCAATTTTTACAGGCTGTGTATGTGCATAGTATGGATTAACTTTGTAGATAAGGTCATTCCTTTATATGTCTTAGAGCTTAGAATTTTACACACTCCTTCTCACGTACACACATTTCTGTCAGGCATTGCAAGATACAGTTTATAGAATCATAGAATGGCTTAGGTTGGAAGGGACCTCAAAGATCATCTAGTTCCAAACCCTGGTTTTAGTTATCTAAGGAATAAAGGAATGATTGCAGTGACCCTCTACTGACCTGTCAGAAAGGACTTGAGAGATTTGACTAAGATATTTTACAGTCTTGGTACTAAACATTAAGTAACAGATATGAGCAGAAACAGATGAAAACCTATTTATCGACCATGTGGTGGACTGTACACTTACTGTTTTGTTTGTATGTTCAG
Seq C2 exon
TGCATTATCATCAGTGGGGAAAGTGGTGCTGGAAAGACAGAAAGTGCCCATTTGATCGTCCAACATTTGACCTTCTTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602:ENSGALT00000015648:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(37.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]