HsaINT0108718 @ hg38
Intron Retention
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:170383710-170386272:+
Coord C1 exon
chr2:170383710-170383814
Coord A exon
chr2:170383815-170386188
Coord C2 exon
chr2:170386189-170386272
Length
2374 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CGCTCCATTTTCTGTGCCAGTGC
3' ss Score
7.61
Exon sequences
Seq C1 exon
TTTTCCAGACTTTATCATGGGGTGAAACGCGCCTCCAATCCCCCCCACATATTTGCATCAGCAGATGCTGCTTACCAGTGCATGGTTACTCTCAGCAAAGACCAG
Seq A exon
GTAAGAACTCACCTTCCTTTCCTACGGAGTCACCCAGTTAAGACATGTTGTGTCTTCCTCGTCAACTCCTAAGTCTTCCTGAAACCTTTCCATTCCGGTTGCTGGTGCTGACCCAAAGAGACAGGAGATGAAGTGGCAGCTCTGTGGAACTTGAGCATAGGTAAAGCCATAGCATCGGGAGAATGTGAAAATGCTTTTCAAGAAACATAAAACAGTCACATGAGGTGCGCTCATTTTCTCTGATAAGATATAATAAAAATGTCTCTAATATGAATATGATGAGAACAGTGCAAACGCAACCTGATTACATGGCAGTGATTGTAATAAAAATAGCATATAGAATGGCATAAGTGAAATTCTTTCCTATTAAGGTCTTAGAATTTTCATGATTCAGTCTTTTTTGTATGAAATATTGCACAGAGGTTGACAGTGACCATGCACCACACCATTTAGCTGCTGAAAAATTGTGATAGATTGGGTAGAGAATGAACAAACCTTAAACTCAATACTAAACACAGGCTCATCCATTTTACCTTTCTAGCCTTCTAATTCACATTGCTCATATATCTAATCTTTCATCCCTTCTTTACTTTCAATAGGTATATTTTTCTTTGTTTCTTTATTCTGTTTGAAATAGAAGTAGTCTAATTTGGCAAGCAAATTTTCTGAGGGTATCAATGTGTGGATTTCCTAAGATCTGGAAAAGTCCCAGCTTTGGGGTTTGTTGAGTAATAGATGACATTATAACAACATAGATTATAAAATGGAATACATGGATTCACTGTAGCTTAGAAACTTAGCTCTTCCAAATTCTTACCTTTCCCAGATACTTGTAAAATGTCCATAGATTTCATAGGGAGGAAGTAAATGGAGAGAAATATATATCGTTTTTAAGTTAAGAAGTTGCCTCACTGTGTTGTCTTTTTTGACACCACTTCTGACACCAAATGTTGTATTTTTTCCAGCATGAACCAATTCTCCAACACCAACTGGGTGCCCAACAATTCAGTTCAATTCTGACACTACCTGGAGTTAGCACAGACTCCACAGATTAAGCGATTAGTGCCACAAGACTGTTCCCACTTTAGATGCCAGCTGCAAATGGAGTACCTAGGCTTCTCACACATCTGCCCAGCCGAATACCAGTCCAGGGGTTCTTGTGACTCTCTTTAGGTTTGATAATTCACTAGGAATGACTCAAGGAACTGAGGAAAACACTTTACTTACATTTACCAGTTTATTATGAAGGGTATAACTCAGGAACAGCCAAATAGAAGAGACACATGGGGCAGGGTGTATGGGGGGAGGAAGGGGGCATGGCACACAGAGCTTCCATGCCTTTTCTGGACACATCCCCCTCCCAGCACCTCAATGTGTTCACCAACTCAGAAGCTCTCTGAATCTCCTTGTTCAAGAATTTGTATAACTTAATCTTTAAATCCCCTCTTCTTTCTAGAAGTTGGGAGGTAGGGCTGAAAGTTCCCACACTCTAATCACATGTTTGGTCTTTCTAATGACCAGTCTGAAGCTGTCTAGGGGGCTCACCTTGAACCACCTTCTTAGGAATAAACTGAGGTATGGTTGAAAGGGGCTCCTTGTGAATAACGAAAGATACTCCTACCACTCTTGGAAATCCCAAAGGTTTTAGGAGCTCAGTGCCAGGAACCAGGGACAAAGACCCAATATATAATTTTTATTATACCACATCCACTAATTTCCTTTATACCTAAAGAGCTCCTAGAAATGAATGATAAAAATATCAACAATACAATAAAAAATGGGCAAACAATACGGACAGGTCATGTAAAAGAAAAGCCTCTTAAGCATATGGAAGGAGGCCTCATTCATAATTTTTAAAATGCAGAATAAGGCTGCACTGAGATACCATTTTTTTAAGCTATTAGATTGTCAACAATCTAACATTCTGTTGTTGAGGCTACAGGAGAGCAGGCACTTTCACATATTGGTATAGTCCCTAGGAAAGCAATTTGGTAACGTGTGTCAAATTTACAAATGTATTTACCTTTTGATCCAACATCCCCATTTCTAGGAATTTCTCCTGCAGATGAACCTGCATAAAAATATAATGACTTAAGTATAAGGTTATTCATTGCAATGTTGTTTATAATTACAAGGAAAAAACTCAAATATCCCAATATTGGACAGATTAAACAGATTATGGTACATATGTACAATGGAACAACAAGTAGCTATACAAAAGGTTGAAGAAGGTCTCTATGTACTGAAATAGGAAGATGCCTAAGATCTATCTCTCAGTGAAAAATTAAGGTGTACAGTAGTGGATGTTATATGAAGCATGCAAGTTGCTTCTGTGCTATAAATTCTTCACTTGACGCTCCATTTTCTGTGCCAG
Seq C2 exon
TGCATTGTCATCAGCGGAGAGAGTGGCTCTGGGAAGACAGAAAGCGCCCACCTGATTGTTCAGCATTTGACTTTCTTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909:ENST00000409044:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(13.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development