DreINT0100813 @ danRer10
Intron Retention
Gene
ENSDARG00000006892 | myo3b
Description
myosin IIIB [Source:ZFIN;Acc:ZDB-GENE-070706-2]
Coordinates
chr9:3844977-3845486:-
Coord C1 exon
chr9:3845382-3845486
Coord A exon
chr9:3845061-3845381
Coord C2 exon
chr9:3844977-3845060
Length
321 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
3' ss Seq
CTTGGTTTCTGTCTGTGTAGTGT
3' ss Score
6.63
Exon sequences
Seq C1 exon
TTTTCCAAGTTATATCATGGGATGAAGCGCTCCACCAACCCTCCACACATCTTTGCCACCGCTGATGCAGCCTATCAGAGCATGGTGACTCTCTGCAAAGACCAG
Seq A exon
GTGCTGCTTACTGGGGCTCTAAAACTATATAGATGTGCATGGGTCAGAAATGAGTTGACTGTTTTTATGCATGATTTTTTGAACACCTTTGTCTTTTTGTAATTACTATAACAGTTTATTTAAGGTGATACACAGATAAAACCAGAAGTTTACATACACTGTATAAAAAGGCGCATATCAATACAAAAAAAAGTTCAGATGTTAATGTGACTAAACTTTTTCTCTTTTAGGTAAGTCAGGATGATCAGATTTCTTTCTGTTATGCTTAATCGCAGAATAATGAGAGAGAGATTTTTTGTTTCTTGGTTTCTGTCTGTGTAG
Seq C2 exon
TGTATAATCATCAGTGGAGAAAGTGGAGCCGGTAAAACTGAGAGTGCCCACCTCATTGTCCAGCATCTCACCTTTCTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006892:ENSDART00000141492:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTATATCATGGGATGAAGCGCT
R:
TTGCCCAGAAAGGTGAGATGC
Band lengths:
182-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]