HsaINT0108718 @ hg19
Intron Retention
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:15576]
Coordinates
chr2:171240220-171242782:+
Coord C1 exon
chr2:171240220-171240324
Coord A exon
chr2:171240325-171242698
Coord C2 exon
chr2:171242699-171242782
Length
2374 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CGCTCCATTTTCTGTGCCAGTGC
3' ss Score
7.61
Exon sequences
Seq C1 exon
TTTTCCAGACTTTATCATGGGGTGAAACGCGCCTCCAATCCCCCCCACATATTTGCATCAGCAGATGCTGCTTACCAGTGCATGGTTACTCTCAGCAAAGACCAG
Seq A exon
GTAAGAACTCACCTTCCTTTCCTACGGAGTCACCCAGTTAAGACATGTTGTGTCTTCCTCGTCAACTCCTAAGTCTTCCTGAAACCTTTCCATTCCGGTTGCTGGTGCTGACCCAAAGAGACAGGAGATGAAGTGGCAGCTCTGTGGAACTTGAGCATAGGTAAAGCCATAGCATCGGGAGAATGTGAAAATGCTTTTCAAGAAACATAAAACAGTCACATGAGGTGCGCTCATTTTCTCTGATAAGATATAATAAAAATGTCTCTAATATGAATATGATGAGAACAGTGCAAACGCAACCTGATTACATGGCAGTGATTGTAATAAAAATAGCATATAGAATGGCATAAGTGAAATTCTTTCCTATTAAGGTCTTAGAATTTTCATGATTCAGTCTTTTTTGTATGAAATATTGCACAGAGGTTGACAGTGACCATGCACCACACCATTTAGCTGCTGAAAAATTGTGATAGATTGGGTAGAGAATGAACAAACCTTAAACTCAATACTAAACACAGGCTCATCCATTTTACCTTTCTAGCCTTCTAATTCACATTGCTCATATATCTAATCTTTCATCCCTTCTTTACTTTCAATAGGTATATTTTTCTTTGTTTCTTTATTCTGTTTGAAATAGAAGTAGTCTAATTTGGCAAGCAAATTTTCTGAGGGTATCAATGTGTGGATTTCCTAAGATCTGGAAAAGTCCCAGCTTTGGGGTTTGTTGAGTAATAGATGACATTATAACAACATAGATTATAAAATGGAATACATGGATTCACTGTAGCTTAGAAACTTAGCTCTTCCAAATTCTTACCTTTCCCAGATACTTGTAAAATGTCCATAGATTTCATAGGGAGGAAGTAAATGGAGAGAAATATATATCGTTTTTAAGTTAAGAAGTTGCCTCACTGTGTTGTCTTTTTTGACACCACTTCTGACACCAAATGTTGTATTTTTTCCAGCATGAACCAATTCTCCAACACCAACTGGGTGCCCAACAATTCAGTTCAATTCTGACACTACCTGGAGTTAGCACAGACTCCACAGATTAAGCGATTAGTGCCACAAGACTGTTCCCACTTTAGATGCCAGCTGCAAATGGAGTACCTAGGCTTCTCACACATCTGCCCAGCCGAATACCAGTCCAGGGGTTCTTGTGACTCTCTTTAGGTTTGATAATTCACTAGGAATGACTCAAGGAACTGAGGAAAACACTTTACTTACATTTACCAGTTTATTATGAAGGGTATAACTCAGGAACAGCCAAATAGAAGAGACACATGGGGCAGGGTGTATGGGGGGAGGAAGGGGGCATGGCACACAGAGCTTCCATGCCTTTTCTGGACACATCCCCCTCCCAGCACCTCAATGTGTTCACCAACTCAGAAGCTCTCTGAATCTCCTTGTTCAAGAATTTGTATAACTTAATCTTTAAATCCCCTCTTCTTTCTAGAAGTTGGGAGGTAGGGCTGAAAGTTCCCACACTCTAATCACATGTTTGGTCTTTCTAATGACCAGTCTGAAGCTGTCTAGGGGGCTCACCTTGAACCACCTTCTTAGGAATAAACTGAGGTATGGTTGAAAGGGGCTCCTTGTGAATAACGAAAGATACTCCTACCACTCTTGGAAATCCCAAAGGTTTTAGGAGCTCAGTGCCAGGAACCAGGGACAAAGACCCAATATATAATTTTTATTATACCACATCCACTAATTTCCTTTATACCTAAAGAGCTCCTAGAAATGAATGATAAAAATATCAACAATACAATAAAAAATGGGCAAACAATACGGACAGGTCATGTAAAAGAAAAGCCTCTTAAGCATATGGAAGGAGGCCTCATTCATAATTTTTAAAATGCAGAATAAGGCTGCACTGAGATACCATTTTTTTAAGCTATTAGATTGTCAACAATCTAACATTCTGTTGTTGAGGCTACAGGAGAGCAGGCACTTTCACATATTGGTATAGTCCCTAGGAAAGCAATTTGGTAACGTGTGTCAAATTTACAAATGTATTTACCTTTTGATCCAACATCCCCATTTCTAGGAATTTCTCCTGCAGATGAACCTGCATAAAAATATAATGACTTAAGTATAAGGTTATTCATTGCAATGTTGTTTATAATTACAAGGAAAAAACTCAAATATCCCAATATTGGACAGATTAAACAGATTATGGTACATATGTACAATGGAACAACAAGTAGCTATACAAAAGGTTGAAGAAGGTCTCTATGTACTGAAATAGGAAGATGCCTAAGATCTATCTCTCAGTGAAAAATTAAGGTGTACAGTAGTGGATGTTATATGAAGCATGCAAGTTGCTTCTGTGCTATAAATTCTTCACTTGACGCTCCATTTTCTGTGCCAG
Seq C2 exon
TGCATTGTCATCAGCGGAGAGAGTGGCTCTGGGAAGACAGAAAGCGCCCACCTGATTGTTCAGCATTTGACTTTCTTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909-MYO3B:NM_001083615:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)