GgaEX1038125 @ galGal4
Exon Skipping
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17839063-17839893:-
Coord C1 exon
chr7:17839816-17839893
Coord A exon
chr7:17839555-17839660
Coord C2 exon
chr7:17839063-17839205
Length
106 bp
Sequences
Splice sites
3' ss Seq
CATCTGTTGTCTGAATGCAGCCT
3' ss Score
5.31
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTTGACACAATGGAAGTTATGCGACACCCTGAGGAAACAACTAACATGAAGCGACAAACTATGGCTTCCTATTTTAGG
Seq A exon
CCTACAACCAAGTGACCACACTCAGATCCAGTCAGCTTGGAATTGTATGCAGCATTGAGACTGAGTATATTTGCAGCAAATTCTGATCAGACAGTGGGATAATGAG
Seq C2 exon
TAAGCTTATTCTCCTGTTGGGGATAGCTGTTTGATCAAATCTGCCTACAAGAGTTATAGTTTGGACAGCTTTTAATTAAAAATTTCAATATGAGCCTTCTTAAACTACAAGAAGGTAATATAAGGAGAGGTGAAGAGAATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602-'43-39,'43-38,44-39
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.500 C2=NA
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
PF0006316=Myosin_head=PD(0.2=20.0)
C2:
NA
Main Inclusion Isoform:
ENSGALT00000015648fB9713
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACAATGGAAGTTATGCGACA
R:
CCTATTCTCTTCACCTCTCCTTATAT
Band lengths:
219-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]