GgaINT0045795 @ galGal4
Intron Retention
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17838629-17839893:-
Coord C1 exon
chr7:17839816-17839893
Coord A exon
chr7:17838835-17839815
Coord C2 exon
chr7:17838629-17838834
Length
981 bp
Sequences
Splice sites
5' ss Seq
AGGGTACAG
5' ss Score
3.14
3' ss Seq
TCTCTTTTTTCCTTTGCTAGTAT
3' ss Score
7.74
Exon sequences
Seq C1 exon
GTTGACACAATGGAAGTTATGCGACACCCTGAGGAAACAACTAACATGAAGCGACAAACTATGGCTTCCTATTTTAGG
Seq A exon
GTACAGCAGTTAAACTGTAAACAAATATTCTGATTATAAGAACAACAGATATTTCTGAAATATATGTGGAGTTGTTAGATCAAAGAGGAAAGTAAGAGACTAAAAAAATAAATAGCTAGTGAGTCTGAAAATACTCATCTGTTGTCTGAATGCAGCCTACAACCAAGTGACCACACTCAGATCCAGTCAGCTTGGAATTGTATGCAGCATTGAGACTGAGTATATTTGCAGCAAATTCTGATCAGACAGTGGGATAATGAGGTAAGAATGAAGCAGAAGCAGAAATATTTTTGTGCAGTGAAATAAACTGTATTCAATGTTCAGGTTGGTTAGGGCAAGAAGTAATGGGCCCATATTTCAGCAGGAATATTCAGGTTAGATGCTAAGAACATTCTGAATAGTTACAATAATGTGGCACTTCAATGGATTATCCTGGGAGAATGTGCAGTCTGTAGCAGTGATTCTGACAAAAAGATTCCTCAGAGATGTGCCTGAAATGATACAGATACATTCAGTGCTCTCCGTGGGTAGAGTACTAAACTGGTGGCTTCTTTCAACCCCATGGTCTCCATGGTTTTCTGTGATTCTTACATGATTGTTTGTTTTACAGTAAGCTTATTCTCCTGTTGGGGATAGCTGTTTGATCAAATCTGCCTACAAGAGTTATAGTTTGGACAGCTTTTAATTAAAAATTTCAATATGAGCCTTCTTAAACTACAAGAAGGTAATATAAGGAGAGGTGAAGAGAATAGGGTAAGTAGAACCAGAATTATAATTTGTGTTTAACAGTTAAAAGCTTTTAATAGATTCTGGAATTTAGCCAAAAGCTTAAAAAAATAAAAACTCGAATACCAATTAACATTATGACAGATTAACATAGAATCAATCATTCCATACTGTTTACAAAATGAATTTCCTGCTTATATAATTGAATTGCAGTTTTTATAGACAAGACTCTGTATCTCTTTTTTCCTTTGCTAG
Seq C2 exon
TATTCCCTCATGGATCTTCTATCCAAAATGGTTGTTGGACAGCCTCACTTTATCCGCTGCATTAAACCTAATGATGATCGAGAAGCACTAACATTTTCTCATGAGAGAGTTCTACTGCAGCTACGATACACTGGAATTCTGGAAACTGTCAAAATACGTCAAAAAGGATATTCTCATCGCATACTTTTTGAAGAGTTTGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602:ENSGALT00000015648:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACAATGGAAGTTATGCGACA
R:
TCACAAACTCTTCAAAAAGTATGCGA
Band lengths:
278-1259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]