HsaINT0108731 @ hg38
Intron Retention
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:170463368-170466711:+
Coord C1 exon
chr2:170463368-170463445
Coord A exon
chr2:170463446-170466505
Coord C2 exon
chr2:170466506-170466711
Length
3060 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGG
5' ss Score
8.17
3' ss Seq
TGCATTTTTCTCCCTGGTAGTAT
3' ss Score
6.69
Exon sequences
Seq C1 exon
GTGGACACTCTGGAGGTGATACGGCATCCGGAAGAAACCACCAACATGAAGAGGCAAACTGTGGCTTCTTACTTCCGG
Seq A exon
GTATGGAGTCTTCTTGATCTCTATTCTGCCTGCTTCCAAAAAGGACTGTCTAAGCCTTCTTATGAGATGCCCAGATGGAGTCAGTGAAACAAGGGCAAAGCACAGAGTCAAGAAAGATTGGGTTGGGGAAGTGGTGGAAGCAAGGAAGGAAGAGAACATTGGGCACAAAACCCTGCCCATTAAGTGACTGATTCTGTTAGCATATGAGCTGCTTCTTGGTCTTAAAGCTACTAGAGGCAGCCACTTTTCTAGCATACTGAATAGTAAAGTAGTTAATAAAGTTCCAGAAGGTGGCTTATAAGTTCAGATACTGAGAGAATCTGTCTTAGCATTGACTTTATTTTCCTAGATTGAATTGACCCCTTGTAAAACCCACTTGTCTGAGCCCTATTATTTCCCATTTCTGCCATCCCTATTTCTGATACTTCATCTAGTTAAATGCCTCCTTTGGGTAAAAACATGGTCTCTAGAAGGGCTCTGTTAAATGCACATTATATAGCAAAGATAAGACATATACACTCTTGCACAGATTTGTTTGTCTTCAAATTATAAAGCGTTAGAGTTGGAAGGCCCTTAGAGACTGGGAGCTAAGGTCCAGATAGTTTCACAATAGAAATACTGTTAGGCCGAGCACATTGGCTCACACCTATAGTCCCAGCATTTTGGGAGGCTGAGGCAGGCGCATCACCTGAGGTCAAGAGTTAAGAGACCAGCCTGGCCAACATGGTGAAACCCCTTCTCTAGTAAAAATGCAAAAATTAGGTGTGGTGGCAGGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACCTGAACCTGGGAGGTGGAGGTTGCAGTGAGCTGAGATTGCGCCATTGCAGGCCTGGGTGACAAAGTGAGACTCCCTCTCAAAAAAAAAAAAAAAAAAAAAATGCTGTTAGATCAAATTTAGAACTGATCTCAGGGATAGCAGAATGAGGTAGTAAGATAGGGTTGGCACAAGAAAGGGCTTGGCAGGGATGAGAGGTCAGGTGGATGGGAAGCTGGAAGAGCCAGGAAGGCTGAAGGGCAGGACTTGGGAGCCAGCACTCTGGATAGAAGGCTCCATGGAAAGCTAGCAGGTGCAGGGATCTAAAACGCGGAAGTCCAGCCTAGCCAATTGTGCTTCAGAGGCAGGCTAGAATTGGGCTCGGTATGAATTGCAGGGGCCCCAGACCTTCGAATCCAGTATTCCATCCATGCATTGAGTCGTGCTATAGCATCTGTGGAAGGTGGGCCCCTGCCTCATCATTCTGATGTTTGGTTATTTATAATTGCTACTTATTTCTTATATTGAGACACACCTGGTCCTATCCCCTTGAGTGGCTCTATCCTCATCTGTTAGTCTGTTAGTCCATTTTATGTTGCTATGAAGGAATACTTGAGACTGGATAATTTTTTTTTTTCTTTTAAGACAGAGTCTGGCTCTGTCACCCAGGCTGGAGTTCAGTGGTGCCATCTAGGTTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCGTCAGCCTCCCACGTAGCTGGGACTACAGGTACGTGCCACCATGCCTGGCAATTTTTTTTTTTTGTATTTTCACTAGAGATGAGGCTTCACCATGTTGGCCAGTCCGGTCTCGAACTCCTGACCTTAGGTAATCCACCCACCTCGGCCTCCCAAAGTGCTAGGGTTACAGGCATGAGCCACTGTGCCCAGCCAAGACTGGATAATTTATAAAGAAAAGAGGTTTATTGGCTCACGGTTCTGCAGGCTCCACAAGCCTGGCACCAGCATCTACTTGGCTTCTGGTGAGGCCTCGGGGAGCTTTTACTCATAGAGCAGGCGTGTTACATGGCAAGAGAGGGAGGAATGGAGAGAGAACAAGATAGAGGGGAGATCCCAGACTCTTTTAAACAACCCGATTTTGCATGAACTAATAGAGTAAGAATTCACTCATTGCCGTGAGGACAGCACCAAGCCATTCATGAGGAATTTGCCCCATGACCCAAACACCTCCCACTGGGCCCATTTCCAACATTAGAGGTCACATTTCAACATGAGATTTGGAGGAAACACACATCCAAACCATATCATCCTCCTGGTAACCCTTGGTGTCTGTATGTGTTTCCCACTGGATTTAGTAGCTCTATTTACTCTGTGAAGTGATCCTCAAGATCTTAGGGCCCCCCTATCAGCAGAAAAGCCTCTGGCTACGGTTTTTCAGAAATATACCCATACAACCAGTTTGGTGTTCTCAAAATACCCGTTCACGAGTGCTAAACCTGAAAAATAAGTTACCTTGGAAACTAGGTAACACCAATTTTGATCTGTAGGAGCAGTGACTATGAAATAATGGAACTGAGTTCCTTTGGCTTATAATAGCTCCTGAAGGTGAGCCCAGAAGAGCTCCAGCAGTGGATGCCCCTGAGGAACAACTGAGGCCCTCCCTCACAAGCACCCCCCTGATTTTCCGTGTCCTTGCTCCCCTCTTGCTGTGAGAGCCCTGTACCAGCTGCTTGGTGTATGTTAGTTGATAGTCACCACAGTCTTCTTTTTGGTACTTCTCTCATTTTCTTTGCCTTGTTTTTGTATTTTTCTTTTCTGTCCCACTACCTTATTACCAATCGTATCTGTAGGATTTGCTTAGACTATCTGGTGGTTCTTAGGCTGAAGAAGCAAATAGCCCCTTCCTCAAAAGCTGGACATTTTAAATTACAGATACAGATTGTGGAACATCACCTTGGAATACCAGCGACAAGCATTCTAGTTCTGGCGGTGGAATTACAGGATAACCTAGATAGAGCATGTTCTTAGCTAAGTTTCTGCCATATGGGATATTGCTTGGCACTAGGTGATGTTTAAAGAATGGTTTTGAATCTGCAGATGGCTATAAGTGCAACTTACATTATTATCTCCTATTGCTGATTTCATGTTCTTCCTCAAGAAGGTCTGTGAGCCTCGAACTGCTCCAGAGGCTTCTGCGGGCCTGTGTTGTAACTATCCATTGTGTTGGTGGTAACCTTGTTCCTTGTGCATTTTTCTCCCTGGTAG
Seq C2 exon
TATTCTCTGATGGACCTGCTCTCCAAAATGGTGGTTGGACAGCCCCACTTTGTGCGCTGCATTAAACCCAATGATGACCGAGAGGCCCTGCAGTTCTCTCGAGAGAGGGTGCTGGCCCAGCTCCGCTCCACAGGGATTCTGGAGACAGTCAGCATCCGCCGCCAGGGCTATTCCCACCGCATCCTTTTTGAAGAATTTGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909:ENST00000409044:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development