MmuINT0104373 @ mm9
Intron Retention
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70124976-70127632:+
Coord C1 exon
chr2:70124976-70125053
Coord A exon
chr2:70125054-70127426
Coord C2 exon
chr2:70127427-70127632
Length
2373 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGG
5' ss Score
8.17
3' ss Seq
GTTTGTTCTCTCCCTGCTAGTAT
3' ss Score
7.86
Exon sequences
Seq C1 exon
GTAGACACCCTGGAGGTGATTCGACATCCAGAAGAAACCACCAACATGAAGAGACAAACCATGGCTTCTTACTTCCGG
Seq A exon
GTATGGAGGCTGCCTTTTCTGTGCTCTACCTGTGTCGAGAAAGGACCAGCCCAACCTTCCCACGTGTCTTCCTCAATGTTCTATTGATGTGAAGAGACACCATGGCCATGGCAACCCCTATAAAGGAAAACATTTCACTGGAGCTGGCTTACAGTTTTGGAGGTTTAGCCCATTTTCATCAATGCAGAAAGCATGACAGCAAGCAGACAGACACGGTGCTGGAAAAGTAGCCGTGGCTGCTGTATCTGGAACAACAGGCAGCAAGGAGAGAAAATCCTCTGTGACACACTTCCTCCAACAAGGCCACACCTACTCCAAAAAGCCACACCTCCTAATCTCTGTCAAGGAGTGCCACTCCCTAATGCCCACGCATTCAAATATGTGACCCATGGGAGACAGTCTTACTCAAGCCACCATGCCCTTTGAGGTCCAGACAATGACAGAGTCCATGGAACCAGGGCCAAACACAAATGCCAGTTAAGAAAGGAGTGGGCAACCAAATCTACGTAGCAAGTTCCAGGCCAGCCAGATCTCCACCTTCTTTCAGAAACAAGGGAGAAAAGATTAAGAGAAAGGAGGAGGCTATAGGGAAAGAACACCACACACAGAGCTCATTTTGTTGACTGTGCTGGGAGTCTTTGGGCAGGTTCTTGGCTTAAAAGCGACGAGAAATAATTCCCCACAAAATAACAGCAATTAGTAACATTTAGGAAGTACTTTTTCAAGTTTGTGCACTGAGAAAAGCACTGGCTTCATTTTTCCAGGTTTGACTGACCCATTTTCCTGAGCCTTGTTATTCTTGTTTCTGCCACCGCAGTTTCTGATATTCTATCTACAGAAACGCTCCTGCCTGCCCTGTAAGAATAATACACTTAGAAGTGTTCTATCAAGTACACTTATAGTAAAGCACCTGGGCCCTTTCCACCAGTTTGCACTGATCCTTATGAAACAGCATTTGGAGACCCTTAGAGATGATGTGCGCTGGGAGAGCTGGCTCAGGCAGCTTCATGGTGGAGATGCTGTTGTTAGGAGCAAGCAGGAGCTGATCTCATAGATGGAGAATGAGATGGTAAGACAGGGTTGGCATAGAAAAGTATTCCACGGGATGGTTTGGGCTAGGGGAGCTGGACAGTGGGCTGGAGGATGATGAAGCAAGCTGAAGGAATAGGACTCGGGAATCCGCACTGTAGGATGGAGGAAGGTTCCTTAATGGAAAGCTATCGACGTCCAACCAAGATGGCGGAGTTTCATAAGCAGAGCGGAGCCAGGCTCACAGTGTGAGTGGTGGGGGCCTCAGACCTTAAAGTTCAGGACTCCACCAATGGAATGATGCGATTCCTCTGACAGCGCCTCTAGCAAGCAGCTCTCTGCGCCTGCTTAATTTCTCTTGGATATTTGTGATTTCCCTTTCTTCCTTATCTTCCTCCGCCTAATCCGGTCTTCTTTACCAACCCTGTTCTTGTCCTCCTAATATCTGATGTGTGTGTGTGTGCGTGTGCGTGTGCGTGTGCGCACACGCGCATGTGTTTCCCTTTGAGACTTGGAGGCTGTGATGTCATCCTTAAGATTCTCAGTGTCCCTATTAGAGGACAAACCTCTAGCATATAGATTTCAGAAATATGACCACGCCAACCAGTTTGGAATCTTCAAAATACTTGTCTCCAAATGCTAGGACAGAAAAACAAGATACCTTGGTCTGCCAGGTAAGACCACTTCTGATTGTTAAGAGGAGTGATTTTAGAAGACTGGAACTCGTTTTTCATGTGACTTCTAATTGTCTTTGAGAGCTCTAACAACGGACAACCTTGAGGGACACACCCCTGTCCCACGAGCCCCTTTCTTGCTGTTCATGTGTTTTTTCTTCTCTGTAAGATATGTAATAGTTGACTATCATAATCTTTTCCTCTAATAATCTTTCCCTATTCCTCCTGCTCGTCCTCGTCCTCCTCATCCTCCTCCTCTTCCTTTCCTTTTCTTCCCCTCCCTCCCTCATCCTTACTATCATTGTTATCAGTATGATTTGCTATGACTTTCTGGTGGTTCTCAGGTGAATAAAACAGCATGTCCCCATGCTAGGTACTATAGTATGTCATCATTTTGGATAATAGAGGGCATTCCAGGCTAACCTAGAACATGTTCTTCAAGGGGTCTCTGCCCTCTGCTTAGCACCCAGATGTTTGAAGAGTGCTTTCAACCTTACAGCAGCTGCAGGGAGAACTTACCTTGCCATCTCCTGTTACTGATTTCCCGTTCTTTCTTGACAATCTCTAGTGCCTCACAAGCCCCCCTCCCCCATTGCTTGGCAGTCCCCCCTCCCCCCATGAGGTGAGTGAGGCCTCACTTCTCACTTCCTGTTTGTTCTCTCCCTGCTAG
Seq C2 exon
TATTCTCTGATGGACCTGCTCTCCAAAATGGTGGTCGGACAGCCTCACTTTATTCGTTGCATTAAGCCTAATGATGACCGCAAGGCCCTGCAGTTCTCCCAAGACAGAGTCTTGGCCCAGCTTCGCTCCACGGGCATCCTGGAGACCGTCAGCATCCGCAGGCAGGGCTACTCCCATCGCATCTTCTTTGAAGAGTTTGTTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-Myo3b:NM_177376:25
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: