BtaINT0098136 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003626 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:26006069-26008352:-
Coord C1 exon
chr2:26008275-26008352
Coord A exon
chr2:26006275-26008274
Coord C2 exon
chr2:26006069-26006274
Length
2000 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
TGCATTTTTTCCCCTGGTAGTAT
3' ss Score
6.28
Exon sequences
Seq C1 exon
GTGGACACTCTGGAGGTGATACGGCATCCGGAAGAAACCACCAACATGAAGGGGCAAACCATGGCTTCTTACTTTCGG
Seq A exon
GTAAGGAGTCTTCTTGATCTCTTCTCTGCCTGTTTTCAGAAAAGATGAGTCAGCCCTTCGCACAAGAGGCCTAGATACCACAGAGTCACTGAAACAAGAGCAAAGCTCAGAGTCAGTTAGGAAAGATGGAGGTGTAGGGAAAGGAGAATTATAACAGGGAACCCACCCTTGAGTACAGCGTGAGACCACAAGTGTCTACAAAGGGCCCTCTGCCACTGGCACATAGTCCACTGAATGTGCTGATTCTGTTAGTGTTTCAGCTGCTTCTTGGCCTTAAAGCTACTGGAGTCAGCCACTTTCCCAGTATATTTACTGAGAAGTAAAGTAGTTAATAAAATTCCAGAAGGAGGCTTATCAAGTTCATGAGAAAATATGTCTTAGCTTCAACTTTATTTTCCTAGACTGAATTGACCCATTGCAAGAGCCATTTGCCTGAGCACAATTATTTCCCATCTCTGTTACCCCAATTCCTGATATTTTTACCTGGTGAATGATTCTTTTGAGTAAAAATGTTGTCTCCATAAGGACTCTGTCAAATGCGCATTAGAGAGGAAAGATAAGAGACTGTCACTTTGTACTGATTTGCACAGATTTGTTTATTTTCAAATTATGAAGCACTGGGATTGGGAACCCATTAGAGATCACTGACCATGGGGAACTGAGGTCCAGGCAACTTCACGATGGAGATGCTGTTAGTCCAAAGACAGAACTACTGAAACCAGGGACAACAGCATAAGGTTGTAAGGTGGGGTTGCCAAAGTAAGGGACTTGGCAGGGATAGTAAGTCAAGTGGATCATGAGCTGGAGTTGCCAGGCAGGCTGGAGGGTGGGCCTGGGAGCCAGCATCATGGAAAGAAGGTTCCACCCAAAGCTAGTGGGTTCAAGAAGGACCTAGAGCCAAGAAGTCTGACCTGTGCTTTAGAGGTAGACTAGAATGGGCCTCTGTATGGATTGTAGGGACCTAGAGGTCTTTGGGTCCAGCGTTCCATCAATGTAGTGATGCCTGCTACAGCTTCTCCAACAGGTAGGTTTTCAGCCCCTGTTTCATCACTTATGGTTGGACATTTCTAATTGCCATTTATTTCTTATCCTGATCCCCTTAGTGGTTTGATTATACTCTCCTAGTTTCTGCATGTATGGGATTTGAAGGCTCTAACTATAAGGTTATCCTCAAGATCCTAGAGTCCCTCTTTCAGCAGAAGAAGCCATTGGCATGCACTTTTCAGAAGCATATCCATAACAAACAATTGGGTGTCCTCAAAATACTAGTCCCCAAATGCTAAAAAAAATGGCACATTGCCAAGCTAGGTTAACACCATTTTGGATCAGTAGCAGGTAAAATTATGAAATAATGGGACTGATTTTATGTGTGGCTTGTAATTGCCCCAAAGACATGTCCAAAAGAAGAACTGCTGCTGTGAATGTCTGTGAGAAACAGAGAGCACCCCTAGTTTTCCATGTGCTCTTTCTGCTCTCTGTACAACCATTTGGTGTATGTTAATTTATCTTCATTAGAATCTCCTTTTACCGTCCAGTTTTCTTGTTTTCTTTGCCCTCTTTATTCTTCTCATTTTGCTTTAGACTTTCTGGTGATTGTTAGGTTAAGGAGGCAACTGACCCCTTCCCTGAAAGCTGGACCTTTGAAATTACAGATACAGTTGATGGAGCATCACCGTGAAATATCAGAGACAAGCTAGTTCTGGCAACAGAGTTATGGGATAATCTAAGCAAATTCTTAGATGGCTGAGTTTCTGCCAAGTGGGATATTGCTTGGCCCTAGGTAATGTTTAAAGAAAATCCACAGGCAGCTATAAGTACAGAACAATATAAGTCAGAACTTATATTGTTATTTCTTTTTGCTGAATTCTTGTTTAGCCTCAAAGGTTCCATGAGTTGTTTACAAGGTGACAAACTGCCCTGGAAGCCTGGGCCAGCCACTGTTGTAATTATCCATTATGATTTTGGTAACCTCACTTCTTGTGCATTTTTTCCCCTGGTAG
Seq C2 exon
TATTCTCTGATGGATCTGCTCTCTAAAATGGTGGTGGGACAGCCCCACTTTGTACGCTGCATCAAGCCCAATGATGACCGAGAGGCCCTGAAGTTCTCCACAGACAAAGTGCGGGCCCAGCTCCGCTCCACGGGCATCCTAGAGACAGTCAGCATCCGCCAGCAGGGGTATTCTCACCGCATCCTCTTCGAGGAGTTTGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003626:ENSBTAT00000061222:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGGAGGTGATACGGCAT
R:
TCGAAGAGGATGCGGTGAGAA
Band lengths:
263-2263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]