DreINT0100805 @ danRer10
Intron Retention
Gene
ENSDARG00000006892 | myo3b
Description
myosin IIIB [Source:ZFIN;Acc:ZDB-GENE-070706-2]
Coordinates
chr9:3798152-3799115:-
Coord C1 exon
chr9:3799038-3799115
Coord A exon
chr9:3798358-3799037
Coord C2 exon
chr9:3798152-3798357
Length
680 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GTTTGTGTTTTGTCTTTCAGTAC
3' ss Score
10.21
Exon sequences
Seq C1 exon
GTGGACACCATGGAAATGATGCGTCACCCTGAAGAAACCACTAACATGAGGAGACAGACAGTGGCGTCTTATTTCAGG
Seq A exon
GTGAGTCCTCGGCAAGTCACATTGTAGAAAAATGTGCATGTATACAGACGTGGACAAAACTGTTGATACTCTTCCATTGAATAAGCACCTCACACCGTCACTTGCTGCCACAAAGTTAGTGGCTACGCAGGAGATAACGTAAGCTCTACTACCAAAGGAGGAGATGACGCCACGATGTCAAAGCAAATAAAAAGTGATTTTTCTCCACCACAAACCCTTATTACTCAGACAGAATTACACAATATAATACTTTTATTAAAGGAGCCTGCCCAACACCACTGAAATCTATCAATAGCCAACTGTCAGCTTGCCCTGCTGAAAAATCCAGCTTAAACCAGACTAGGCTGGTTGGCTGGTTTAAGCTGGTCGACCAGGCTGGTTTTAGAGGGGTTTTGGCCATTTCCAGGCTGGTTTCCAGTCATTTCCAGCCTGGTCTTAGCTGGTCAGGCTGGGACATGACCAGCTGAAGCCAGCTTGACCAGCCTAGCCAAGCTGGGAGTCCAGCCATAACCAGCTATGTCCAGCTTAAACCAGGCTGGTCAAGCTGGTTTTAGCTGGATTTAGCTGGTCATTTGCCAGCCTGATTTTTCAGCAGGGTGGTGTGTCCCGGTCAGAGACACAAGACTCAAATCTGCCTATAGCATTCAAAAAAATGATTAGGTTTGTGTTTTGTCTTTCAG
Seq C2 exon
TACTCTCTTATGGACTTGCTGTCCAAGATGGTGGTCGGGACACCTCATTTCGTGCGCTGTATCAAACCTAATGACGACCGACAGGCTCTGCGCTTCAATAAAGAGCGTGTGATGGTTCAGCTGCGCTACACCGGCATCCTGGAGACCGTCAACATCCGCAGACAGGGCTATTCCCACCGCATCCTCATCCAGGAGTTCGTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006892:ENSDART00000141492:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACCATGGAAATGATGCG
R:
TGTTTACGAACTCCTGGATGAGG
Band lengths:
281-961
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]