RnoINT0097205 @ rn6
Intron Retention
Gene
ENSRNOG00000030022 | Myo3b
Description
myosin IIIB [Source:RGD Symbol;Acc:1560313]
Coordinates
chr3:56557710-56560479:+
Coord C1 exon
chr3:56557710-56557787
Coord A exon
chr3:56557788-56560273
Coord C2 exon
chr3:56560274-56560479
Length
2486 bp
Sequences
Splice sites
5' ss Seq
CGGGTACGA
5' ss Score
8.06
3' ss Seq
GCTTGTTCTCTCCCTGCTAGTAT
3' ss Score
7.38
Exon sequences
Seq C1 exon
GTAGACACCCTGGAGGTGATTCGACATCCAGAAGAAACCACCAACATGAAGAGACAAACCATGGCTTCTTACTTCCGG
Seq A exon
GTACGAAGGCTACCTTTTCTGTGTTCTACCTGTTTCCAGAAGCCTAACCTTCCCATATGTCTTACTCAATGTACTATTGCTGTGAACAGACACCATGGCCATGGCAACTCATAAAGGAAAACATTTCATTGGAGCTTGCTTATAATTTAGTCCATTTTCATCAATGCAGAAAACATGGTGGCAAGGAGGCAGACATGGTGCTGGAAAATAGCTGTGAGTTCTATATCTGAAACAGCAGGCAGCAAGAAAAGAAGGACACTGGGCCTGGCTGAAGCATTTGAAATCCCAAAGCCCACCCTGTGTGACACACTTCCTCCAACAAGACCACACCTACTCCAAAAGGCCACACCTCCTAATCCCTGTCAGGTAGTGACACCCCCTAATGCCCAAGCATTCAAATAGGTGAGCCATGGGAAACAGTTGCATTCAAGCCACCACACCATGTGAGGTTCAGATGATGACAGAGTCCACAGAACTAGGGCCAGACAAAAATACCAGTTAAGAAAAAGATGGGTAACCAAATCTACATACCAAGTTCCAGGCCAGCCAGCCCTCCATAGTGAGTCCAGCCAGCCCTCCATAGTGAGTCCAGCCAGACCTCCACAGTGAGTCCTTCTTTCAGAAAACAGGGAGGAAAGATTAGGAGAAAGGAGGAGGCTGCAGATAAAGAATACCACACACACAGCCCATTTTGTTGACTGTGCTGGGAGTCTTGGAGCAGCTTCTTGGCTTAAAAGCGATGGGAAATACTTTCCCACCGAGCAATAGCAATTAATAAAGTTTAGGAAGTACTTTCAAGTTTGGACACTGAGAAAAGCACTGGCTTTATTTTCATGGGTTTGACCGACCCACTTGCCTGAGTCGCATTGCTCTCATTTCTGCCACCCCGATTTCTGTCTAGAGAAATGTTCCCATTGTGTAAGGACAGTACACAAGAAGTGTTCTATAAATACTTGTATGATAAAGAGAAGGCACATGGGCCATTCCACCAATTGGCACTAATCCTTATGAAACAGCATTTGGAGACCCCTCAGAGATGATGTGCCCTGGGAGAGAGAGTTTGGGTAGTTTCATGGTAGAGGTGCTGTTGTTAGGAGAAAGCTGGAGCTGATCTCATGGACGGAGAATGAGATGGCAAGACAGGGTTGGCATAGAAAAGTATTTGACGGTATGGTTTGAGCTAGGGGAGCTGGACCATGGGCTGAAAGACAAGGCCAGCTAAAGAGTTGGACTTGGGAATCTGCAGCAGAGATAGAAGAAGGTTTCTTAATAGAAAGCTATCAGAGTCCAGCAAAGATGGCGGAGTTTCATAGACAGAGTGAACTGGGCTCACAGTATGAGCGGTAGGGGCCTCAGACCTTGAAGTCCAGGACTCCACAAATGCTGCCATTTGTGCCTTACAGTGTCTCTGGCAAGCAGCTCTCAGCATGTCTCTTGGATATTTGTGATTTCCTTTCTTCCTTATCCTCCTCAGCCTAGTCTAGTCCTCTTTACCAACCATGTTCTTGTCCTCCTAGTATATGTTGGTGCATGTGTACACATGCATGTGTCCCTTCATGTGTGCATGTGTTTCCCCTTGAGACTTGGAGGCTCTATGATTGTGATGTCATCCTCAATATTCTCAGCATCCCTATCAGAGGACAAGTCTCTAGCTTATAGTTTTGAGAAGTATGACCATGCCAACCAGTTCGGTATCTTCAAAATACTGGTCTCCAAATGCTAGAGCAGTAAAACAAGATACTTTGGTCTGTTAGATAACTTCTGATCATTACGAGGAGTGGCTTCAGCAAATTGAAACTTGTTTTCTGTGTGGTTTATAACTGCCTCTGAGAACTCTAATAATGGACAACCCTGAGGGACACACCCCTGTCCCACAAGAACCCTTCTTGTTGTTCATGTGTTTCTTCTTCTCTGTAAGGGATGTAATAGTTGACCATCATAATCCTTTCCTCTAATAATCTTTCCCTATTCCTTTTCCTCTTTGTTTTCTCCTCCTCTCTTCTTCCTAGTCCTCCTCCTCTCTTCTTCCTAGTCCTCCTCCTAGTCCTCCTCCTCTTTACCCCTCCTCTTCCTCTTTTTCCTCCTCCTCCTCTTCCTTTCCTTTTCTCCCTCTCCCTCCCTCATCCTTATTACCAATGTTATCAGTATGATTTGTTGTGACCTTTCTGGTGGTTCTCAGGCGAATAAAGCAGTATGACCCCATGCTGGTTATTATAGTATGTCATCCCTTTGGATAGTAGAGGGGATTCCAGGATAACCTAGAACATGTTCATAAGGGGTTTCTGTCCTGTAGAGATACTACTTCAGCACCTGAATGTTTAAAGAGTGATTTCAACCTTGTGAAGTGAACTTACCTTGCCGCCCCCTGTTACTGCTTTCATGTTCTTTCTCAACAATCTCTAGTGCTTCAGAAGCCCCCTGCTGCTCAGCAGGCCCCTGGGACTGGTACCTTGTTTCTCACTTCATGCTTGTTCTCTCCCTGCTAG
Seq C2 exon
TATTCTCTGATGGATCTGCTCTCCAAAATGGTGGTTGGACAGCCCCATTTCGTTCGTTGCATTAAGCCTAATGACGACCGCAAGGCCCTGCAATTCTCCCAAGACAGAGTCTTGGCCCAGCTTCGCTCCACAGGGATCCTGGAGACTGTCAGCATCCGCAGGCAGGGCTACTCCCATCGCATCCTTTTCGAAGAGTTTGTAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030022:ENSRNOT00000037188:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]