GgaEX1038162 @ galGal4
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192399126-192401078:-
Coord C1 exon
chr1:192400925-192401078
Coord A exon
chr1:192400087-192400163
Coord C2 exon
chr1:192399126-192399245
Length
77 bp
Sequences
Splice sites
3' ss Seq
CTGTGCCTCTCTTCCCCCAGCTC
3' ss Score
11.14
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GGTAACTGCACAACCTGCGATGGCAGAGATGACAGCAAGGAATATGCCAACATCCGCTCTGCCATGAAGGTCCTTATGTTCACCGACACAGAAAACTGGGAGATCTCCAAGCTGCTGGCTGCCATCCTGCACATGGGGAACCTGAAGTATGAAG
Seq A exon
CTCGGACCTATGACAACCTGGATGCTTGCGAGGTTGTGCAGTCAGCGTCACTGATCACTGCAGCATCATTGCTGGAG
Seq C2 exon
GTTGACTCTCAGGATGTGATGAACTGCCTCACCAGCCGAACGATAATCACCAGAGGTGAGACCGTCTCAACCCCTCTCAGCATGGAACAAGCACTGGATGTGAGGGATGCTTTTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'11-14,'11-13,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.7=100)
A:
PF0006316=Myosin_head=FE(3.8=100)
C2:
PF0006316=Myosin_head=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGACACAGAAAACTGGGA
R:
CCAGTGCTTGTTCCATGCTGA
Band lengths:
171-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]