MmuEX6012388 @ mm10
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98094276-98095782:-
Coord C1 exon
chr7:98095629-98095782
Coord A exon
chr7:98094667-98094743
Coord C2 exon
chr7:98094276-98094395
Length
77 bp
Sequences
Splice sites
3' ss Seq
GTGTCCCTTGCTGCTGGCAGCCC
3' ss Score
5.69
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GGTAACTGCATCACCTGTGAGGGCCGCGTGGACAGTCAGGAGTATGCCAACATCCGCTCTGCCATGAAGGTTCTCATGTTCACAGACACGGAGAACTGGGAGATCTCGAAGCTTCTGGCTGCCATCCTACACATGGGCAATCTGCAGTATGAGG
Seq A exon
CCCGGACATTTGAGAACTTGGATGCGTGTGAAGTCCTCTTCTCCCCATCGCTGGCCACGGCAGCTTCTCTGCTCGAG
Seq C2 exon
GTGAACCCCCCAGACCTGATGAGCTGCCTCACCAGCCGCACCCTCATCACCCGTGGGGAGACGGTGTCCACCCCTCTCAGCAGGGAACAGGCGCTGGATGTGCGAGATGCCTTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'29-24,'29-23,30-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.7=100)
A:
PF0006316=Myosin_head=FE(3.8=100)
C2:
PF0006316=Myosin_head=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGAACTGGGAGATCTCG
R:
AAAGGCATCTCGCACATCCAG
Band lengths:
181-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types