GgaEX1038164 @ galGal4
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192414385-192418320:-
Coord C1 exon
chr1:192417839-192418320
Coord A exon
chr1:192416573-192416704
Coord C2 exon
chr1:192414385-192414498
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTCTTGTTCTAGAGC
3' ss Score
10.38
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TCATTTCTCTGGGACTGGTGATTGCAGTGTCCTTCAGGTCTCCGACTAAGCTTCACCCCTTACTGGAGAGACTGGAAGAACTTAAGTGAAGAGAAGCAAAGTTGTTTACTTTGCTTTGAAGATCCCACAATATCTAGTTATACAGAGCAAGTATGGCTGGTGGATGGAAGTTTTTCTACTAGGAGATCTTCACCAAAAGCCAGATTGTGAATGAGGTCAGTGGGTGCCTTGCATGCAGCAGCCATGGCCACGCCAAAGGTCTAAAGCAAACCGACCACATCTCTCTGGTATTCATGGTGGAATACGTATAGAAAGCAGAGGGCAACAAACACAGCTGCAAGATTTTGGAAATGCTGAAGAGAAAGAAAGTCGTCTTCATGCAGCCATGTGCTGAGGTGGTGGAAGATCAGGACAGAGACCAGGGCAAATGGACACTGCTCCGCAACGTCAACCAGGCCCTGAAGCCCACAACTATTCTAGCG
Seq A exon
AGCAATCTTTACCCAGCTGATGAGGTGTCAGAAGGGCTTTCTGCTGAGCAGGGACTGAGCTCCCCAGCTCTGCTCTTGCTGACACCTTGATCAAGTTACCTACCCTGTGCATGAATTTGCACAGCTCTGCAG
Seq C2 exon
GGGGATTATGTGTGGATGGACCTCAAAACCGGTCGGGAATTCGATGTTCCCATTGGAGCGGTGGTTAAACTGTGTGACTCTGGGCAGATCCAAGTTGTGGATGATGAAGGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'2-4,'2-3,3-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000001046fB9723
Main Skipping Isoform:
ENSGALT00000001046fB9725
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGACCACATCTCTCTGGT
R:
AATTCCCGACCGGTTTTGAGG
Band lengths:
255-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]