GgaEX1041412 @ galGal4
Exon Skipping
Gene
ENSGALG00000011007 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr2:31823853-31868660:-
Coord C1 exon
chr2:31865213-31868660
Coord A exon
chr2:31847072-31847197
Coord C2 exon
chr2:31823853-31824095
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCTGATATGTTTGTTTTCAGATC
3' ss Score
10.5
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CAATCCCTCAGCGCGGAGCCCGCCCCAAAGCCGCAGGGGGATTAGCTCCGTCCCTCACCCCCGGGGCGCGCAGTATGCCCTGCCCTGCCCGGCCGCGGGGCTCAGCCCCGACTTAGCACCGCGATCCCGCTCTCCGTCCCCGCATCGCCTCAGCGCAGCCCGCCCCACCTGGCCGTGAGGCGCCGCCCGTGACGTCATGGAAACACCCTCGCCCTCAACCGCCGGGCGGCAATAACGCCCCTCGCGGGCAGGAGGAGGAAGGCGAATACGATCTTCCCATTGGCCGGGGCGGCTGTCAATCCAGAGCGGCGGCCCCGCCCCCAGCCCCTCTCGGGTTCGTCCCCGCGGAGCCGAGCCGGTGTGCTCGGCTGTGGTGCTGCTTTGCGCGCTCCTGCTCTTCCCTGGCGCAGAGAAAGTCGTGCTTCGCGTTTGTGGCCGCCGCTCTCGTCTGACTCCTTCTATCCTCCCTCTTCCCTGCGGCCGGCAGGTGTGGGGCTCAG
Seq A exon
ATCCAGCAGCAGACTCCCATGAGCTTCCCAGGTGTTGCCTAATGGAATTGCTTGGGCTTCTACCACTCTAAAAGAAGAAGAGATTTGTATTCTACATGATCAGCTCTGAGGGACTGCCCACTCACT
Seq C2 exon
GAATTTCTATGGGATGCAGATCATGCTGCTGGAATGCATTTGGGTGAGGGATGAGTTCTGCATTACTCTCAGGAGTCTTCCAATACATTTGCTTGATTACCTTTTAATGACATTCTAAGTGAGCTGATGTGAAATAAATGACCTTGAATCATGAGTGAAGAAAAAAACTTCGGTGCATCCCAGAAAATGTTGTCTCCTTCAAGAAGTACTAGCAGCTGCTCCTCTAAGCAGGGAAGTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007_MULTIEX2-1/5=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.548
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCTCGTCTGACTCCTTCT
R:
ACATTTTCTGGGATGCACCGA
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]