GgaEX1041413 @ galGal4
Exon Skipping
Gene
ENSGALG00000011007 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr2:31823853-31847197:-
Coord C1 exon
chr2:31847072-31847197
Coord A exon
chr2:31841201-31841390
Coord C2 exon
chr2:31823853-31824095
Length
190 bp
Sequences
Splice sites
3' ss Seq
AAAGTTCTTTAACTTTCCAGACT
3' ss Score
5.15
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ATCCAGCAGCAGACTCCCATGAGCTTCCCAGGTGTTGCCTAATGGAATTGCTTGGGCTTCTACCACTCTAAAAGAAGAAGAGATTTGTATTCTACATGATCAGCTCTGAGGGACTGCCCACTCACT
Seq A exon
ACTGTTCCTGATGCCAAATGCATGAACTCCTAGGATTCCACTGGGCTAAAAATGAGTCATGGCAAAAATCCGTAAGTGCCAGAGAATTTTCCGTTTTAGAAGCAAGCAGTGGATCCCAAAGAGGGCCTGGTTGAGAAGACCCTTATGAATGTGCTTACTTTAAGCCTGTGCTTAAATCTCCTTACTATAG
Seq C2 exon
GAATTTCTATGGGATGCAGATCATGCTGCTGGAATGCATTTGGGTGAGGGATGAGTTCTGCATTACTCTCAGGAGTCTTCCAATACATTTGCTTGATTACCTTTTAATGACATTCTAAGTGAGCTGATGTGAAATAAATGACCTTGAATCATGAGTGAAGAAAAAAACTTCGGTGCATCCCAGAAAATGTTGTCTCCTTCAAGAAGTACTAGCAGCTGCTCCTCTAAGCAGGGAAGTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007_MULTIEX2-2/5=1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.548
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCAGCTCTGAGGGACTGC
R:
GCAGCTGCTAGTACTTCTTGA
Band lengths:
249-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]