GgaEX1041592 @ galGal4
Exon Skipping
Gene
ENSGALG00000005318 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr5:6870854-6872080:-
Coord C1 exon
chr5:6871989-6872080
Coord A exon
chr5:6871130-6871186
Coord C2 exon
chr5:6870854-6871026
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTCCCGGTTTCTGCTGTAGGGC
3' ss Score
10.59
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
GTTTCCTTAAAACGAAGAGAAAAGCATTTCTGTGGAGGCACCATTGTTTCTGCTCAGTGGGTGGTCACGGCAGCTCACTGTGTCTCAGACAG
Seq A exon
GGCTGATTCAACGCATTTTGACTGTACATATTATACTCGAAAATCTGAAGATGAAAG
Seq C2 exon
GAACCTACTCAAGTATTTGAATGTCACTGCAGGAGAGCATGACTTAAGAATCAGGGAGAATGGAGAGCAGACACTCCCTGTTAAATACATCATTAAACATCCAAACTTTGACCCCCGAAGGCCGATGAACTATGACATAGCCCTTCTCAAGCTTGATGGAACCTTCAACTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005318_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(12.2=100)
A:
PF0008921=Trypsin=FE(7.2=100)
C2:
PF0008921=Trypsin=FE(23.7=100)
Main Inclusion Isoform:
ENSGALT00000008522fB10219
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTCACTGTGTCTCAGAC
R:
CGGGGGTCAAAGTTTGGATGT
Band lengths:
140-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]