GgaINT0055924 @ galGal4
Intron Retention
Gene
ENSGALG00000005318 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr5:6870854-6872080:-
Coord C1 exon
chr5:6871989-6872080
Coord A exon
chr5:6871027-6871988
Coord C2 exon
chr5:6870854-6871026
Length
962 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTATTTTGCACTTCTTACAGGAA
3' ss Score
9.6
Exon sequences
Seq C1 exon
GTTTCCTTAAAACGAAGAGAAAAGCATTTCTGTGGAGGCACCATTGTTTCTGCTCAGTGGGTGGTCACGGCAGCTCACTGTGTCTCAGACAG
Seq A exon
GTATGGATGTGATCTTTCAGGAGCAGGCTGCAGGTGCAGAAGAACGTTGATTGTAAAAGCATGTATAATGTAGCATCTGTTTCTAGAGATTACTCACAGATGCTGCTCTTTCATTTGTAACCAGTATTTTCCATGTTATATCAGGAAGGGGGAAAAGACAAAACCTTTGAACATTTCAAAAATAGGAGTAAATAGCCTTTCAAGCCAGATAGAGACTGATTTTGAAATTGTAGGTTTACGGCTGTTTACGAGGATGAATAGTGATAGGACAAGAGGGAATGGTTTTAAACTGAGATGGGGGAGATTTAGGTTAGATATCAGGAGGAAGTTTTTCACCCAGAAGGTGGTGACGCACTGGAACAGGTTGCCCAAGGAGGCTGTGGATGCCCCATCCCTGAAGACATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGCTGGTTGGCGACCCTGCACATAGCAGGGGGTTGGAACTTGATGGTCTTTGTGGTCCTCTTCAACTCAGGCCATTCTGTGTTTCTATGATGATTCTATGTTTTGAGTTGGTACTAGCGACCCTAAGACAGGATTCACAGTGTTTTTGAAACATGATCTGCGAATGCTAGAGAAGTGGTCTTATTTTTTTTCTGTACTTCCCTGGAAGTCTTTTACATCTTCCACCGGAAAAGCAGTGTGATCAAACAACTTCAAACACAAGAATAGGATCTTGTTCTTTAGCAGACCACTTAAGTACAGATAGGAGTGTAGCAAAACTTATTTTTTCACTGTTCTTGTGTCTCCCGGTTTCTGCTGTAGGGCTGATTCAACGCATTTTGACTGTACATATTATACTCGAAAATCTGAAGATGAAAGGTATTAGATATCATTAGTAAAACTCTTCTGTTTACAAACAACTACACTCTTCCTTTCACTTTGAAGATGCTGTAGTTGAATTTTTATTTTGCACTTCTTACAG
Seq C2 exon
GAACCTACTCAAGTATTTGAATGTCACTGCAGGAGAGCATGACTTAAGAATCAGGGAGAATGGAGAGCAGACACTCCCTGTTAAATACATCATTAAACATCCAAACTTTGACCCCCGAAGGCCGATGAACTATGACATAGCCCTTCTCAAGCTTGATGGAACCTTCAACTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005318:ENSGALT00000008522:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(12.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTTAAAACGAAGAGAAAAGCA
R:
TGAAGTTGAAGGTTCCATCAAGCT
Band lengths:
263-1225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]