MmuINT0114167 @ mm9
Intron Retention
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:114938296-114940125:-
Coord C1 exon
chr7:114940034-114940125
Coord A exon
chr7:114938469-114940033
Coord C2 exon
chr7:114938296-114938468
Length
1565 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTCCTTCTCCCTTTTTATAGAAA
3' ss Score
10.17
Exon sequences
Seq C1 exon
GTGTCTCTGAAACAAAAGCAGAAGCACATCTGTGGAGGGACCATCATCTCTTCACAGTGGGTCATCACAGCCGCTCATTGCATGGCTAACAG
Seq A exon
GTAGGAAACCTTGGTTGATGGAGGAAGACAAGGTTACCCCATCCTGCACCTTGGAATCAGAACTGATTACTCTTGTAAAACACAAGGAAGATAATTGGGTGTCACAAATGAGGCTTAGTGACATTGTAGGCTAATTCTCAGGTTAGTAGGTAAAGGATTCTGTGCAGAGGCAAGATGCTGTATTTACATAAACCCACTGAAGTCATCAAAAAGTATTATCAAAAGACTATCTTGGGAAAGTTTCCTAATAGTTTTGATTAAAATGTTGTCGTGGAAAAACACTACCTGGTTCATTATACATGTTAAGAAAACAAAGACAGACCAATAAAATACAGATGTTTATGTCTTCCTTCCTGTTGGACTTGCTTCTCTGAGCTTCAACCTAAGCACTTTTATTTTTTTAATTAGCTTTCTAGTGTGATCCAAATACTCCACTGTTGGCATTCTATACATATACTAGGCTGTAGTCAAGATTATGTCCCCATGGTTGTTCTTTCATTTCAAGTCTAAAAGCATTCTTGGGATGCTCATTAACTGCCAGTTGCCAATGGGTATCAAATACACAAAAATTACTAGGCATGATGCCCCCAGTGGGTCCATAGTTTAAAAGAGAAATTAGACTGGAATGGTGTGGTACATCTTTAGACACAGTTACTTGAGCAGCTGAAGCAGTAAAATTGCATGAGTCTAGGAATTTGGGGCCAGCCTGAGGGATATAGAAAGACCACCTATGTTGAGTAAAAATAAAAATAAACAAGCAAACAAACAAACATTTAACAATGTCCCTGCAATGGAGGCAGTGGTATGCTAGAGAGATGCTATGTATTATAGTAAGTACCTGATATATCCAAGATTCGGGAAAACATTACAATAGAAATGATGGTGCTCTATCTAATATTATATAAAATATCACCATTGGAAAAGAAGGGTTCCAAAGGAAGAAAAGCTCAAAATGCTTACTTCATTCCATCTCATCCTATCAAGTTCCTTCAAGATAACACTGACCTTAAGAAATGGCATCATTCTCATTTTGTGGGAGAACAGTAAATTACAAATATAAAGAAGGCAGAGGCAATCCCTGCTTCGGGCTGTTGTAATTGGTCCAAATCCTTGAGTATGTGTACTCTCTGGAACATCAGAGTTAGGTTGCTGTCCTTCATAATACACACACCACGTGAGATTTTTAACACTGAAGCAACACCCTTACTAGGAATCACAAATACTTCACAAAATAACTCACTGGTGTTATGACTAGGACAGCCTAATAAGATAGTTGAGTGGTTTCATATATATTTTAGCTCCCTGGATTACAATGCATGTCTGTTTCTCTAGCTGATTATAAACAACACTGGCAAATATTAAATATATCATGTCACTATCTCTGCGCTGGGTCTTCTGTTTTTTTTTTTTAAATAGCAGTAGAACCATTCTCGTTCGCTTGGCTCAGCACTCCCATGCTCCACATTATCCACCCATGTTAATTTGAAGAGGCCAATTTTCCAGCATTTACAACCATACTTAGAAGCTCATTAAAACCCCATCTCTTTCCTTCTCCCTTTTTATAG
Seq C2 exon
AAACATTGCATTAACTTTGAATGTAACTGCTGGAGAACATGACTTGAGCCAAGCCGAGCCAGGAGAGCAAACACTTGCCATTGAAACCATCATCATACACCCGCAGTTCTCCACCAGAAAACCTATGATCTATGATATAGCCCTTCTGAAGATGGCTGGAACCTTCCAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236-Ovch2:NM_172908:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(12.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCTGAAACAAAAGCAGAAGC
R:
GGTTCCAGCCATCTTCAGAAGG
Band lengths:
254-1819
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: