BtaINT0106489 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037921 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr15:45607341-45609383:+
Coord C1 exon
chr15:45607341-45607432
Coord A exon
chr15:45607433-45609210
Coord C2 exon
chr15:45609211-45609383
Length
1778 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTACTCTTTCCTCCTCATAGAAA
3' ss Score
9.93
Exon sequences
Seq C1 exon
GTGTCTCTGAAACAAAGGCAGAAGCATGTCTGTGGTGGGACCATCATCTCTCCACAGTGGGTGATCACGGCTGCTCACTGCGTTGCAAACAG
Seq A exon
GTAAGGAAAGTCCAGCCGATTGATAAAGGTCAGATTACCTTTCTTCTTCCTGGGAATCAGCAGCAATAACTCTCTTAAAATATGGGATGGTGCAATGATTGCTTAAGGGAAGACATGCAGGTTGCATAATATAAATAGGGCTCAAAGACATTGTCAAGGGCTCTAAACTTGATAGAAAACATGCATTCCTTATAGGAGTGAATACTTTGATAATTAAAATGACTGGATTAATAAAGAATAATATCCAAGTGAGAAAAAAAAGCATCACAAAGATAGATTTGTGAAAGTTCTCCCCTAGTTTTCTTAAATTCCAATGAAAAAACCATCCAGCTCATTATGCATCTTAATAAATGAATAAAAGAAAACAAAAGGAGGCCAATAAAACATGAAGAAGGCTTCTGTGTCTTCCTTCCTATTGATCCTGGTTCTCTGAACTTGAACGATTTCCATTTTTATCCATTCTCTTGTGTGCTCCAAATGTTCTATTGTTGCCAGTGTTCTTGATGCGCATAAAGCAGCACTCAAGATCGCGTCCCCCTATTTTCCCTCTTTCATTTCATGTCTGCAAACATCTCCTGGATATTTCCTTAAAGCTGTACACTAATAGCTATCAAAGATACAAAGATGACTCAGAGGTGAACCCTGCCCTCCGAGAGTTGATTGTTTAAAGAAGAGTCAACTGATAATTTCACTGCAGTGTGGCATGTGGTTAGGCTAGAAAGATGCTAGGGAAGTATGCCAAGAGAAAATGATGCCTTTTCCAATGTTGTATTAAATCATCTTTTCTGGATCCCCAGAGATCCCCTTCTAGATCCCTAAGGTCTTAATCCACCTCAGTGCATGCTGTCAAGTTCCTTTCAGATACCTTTGCAGCAGGTAGAAGTAATATAGGTCTTCAGTCTTTCCCATGTTAGATCTCTAAAATACAAACACGAAGGAAGTAAGGGAAGATCCCCTCTTCCCATTACTGCAATCAGTCCCAAAGCTCTGAGTGTGCATACTCTCTGGGATATCAGAGTTATGATGCTATTATGTCTTTCATGGTATGCATTATGTATTAGATCTCTGGCATTAAAGCAGCCTTCTTGATGAGAATCACCAAATACTCCCAAAGGATATCAGTGATACCCTGTATGCAAGACAGCAAAAGAGACACAGATGTATAGAACAGTCTTTTGGACTCTGTGGGAGAGGGCGAGGGTGGATGATATGGGAGAATGGCATTGAAACATGTATATTATCATATGTGAAACGAATCGCCAGTCCAGGTTCTATGCATAAGACAGGGTGCTTGGGGCTGGTGCACTGGGATGACCCAGAGGGATGGGATGGGGAGGGAGGTGGGAGAGGGGTTCAGGATGGGGAACACATGTACACCCATGGTGGATTCATGTCAATGTATGGCAAAACCACTACAATATTGTAAAGTAATTAGCCTTCAATTAAAATAAATAAATTTATATTTTAAAAAGAGAGACCAAATCAACCATCTGGGGTAGCTTCAGATCTCTGAATTACAGTGTATACACAAACCCTTGGATGCTTAACAAATAACATTGCAAAGTATTCAGTTTATCTTATTATTAGTTCCCCATGAGGCTACTTTCACTAGTCCCCCACTCACACTGGGAACCTCTACATTTGGAATCATTTTTCTGTTCAGAAGCTGCACACATGCCTTCTCCATTCATCTCATTTTGAAGAGGTCAGTTTGTCAACCATTACAACTGTACTCAGCTTCAGTGAAATCCATCCCTTTTACTCTTTCCTCCTCATAG
Seq C2 exon
AAATACTGTATCAACTTTCAATGTTACTGCTGGTGAATATGACTTGAGATATGTGGAGCCAGGAGAGCAAACCCTCACCATTGAGACCATCATCATACACCCACACTTCTCTACCAAGAAACCAATGGATTATGATATCGCTCTTTTGAAGATGGCTGGAGCTTTCCGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037921:ENSBTAT00000063712:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(12.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTGAAACAAAGGCAGAAGC
R:
AAAACGGAAAGCTCCAGCCAT
Band lengths:
262-2040
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development