RnoINT0106267 @ rn6
Intron Retention
Gene
ENSRNOG00000019794 | Ovch2
Description
ovochymase 2 [Source:RGD Symbol;Acc:1564636]
Coordinates
chr1:172023393-172025182:-
Coord C1 exon
chr1:172025091-172025182
Coord A exon
chr1:172023566-172025090
Coord C2 exon
chr1:172023393-172023565
Length
1525 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTCCTTCTCCCCTTTTATAGAAA
3' ss Score
10.41
Exon sequences
Seq C1 exon
GTGTCTCTGAAACAAAAGCAGAAGCACATCTGTGGAGGGACCATCATCTCTTCACAGTGGGTCATCACAGCTGCTCATTGCATGGCAAACAG
Seq A exon
GTAGGAAAGTTTGGTTAATGGAGGAAGACCAGGTTACCCATCCTACACTTTGGAATCAGAATTTCTTACTCTTATAAAACACAAGAAAGTTAACTGGGTGTCACAAATGAGTCTTAGTGACATTGCAGGCTTATTCTCACATTAGTAGGTAAAGAATTTTGTGCAGAGACAAGACGCTGTATTTACATAAACCCACTGAAGTCCTCAAAGAGTAATATCAAAAGACTGACTTGTGAAAGTTTCCTAATATTGTAGTGAAAAACCACTATGTGGCTCATTATACATGTTATGCAAATAAAGACAGACCAGTAAAATACAGATGCTCATGTCTTTCTTCCTATTGTGCTTGCTTCTCTGAGCTTCATCTTAAGAACTTTTATTTTTATCACCTTTCTAGTGGGATCCAAATGCTCTACTGTTGGCATTCTATGCATATACCAGGCTGTTTCCAAGAGTATGTTCCCATAGTTATTCTTTCATTTCACATCTGAGAACATTCTTGAGATGCTCATTCACTACCAGTTGCCAGTGAGCACCAAAGACAAAAAAGTGACTGAGACATGATGCCCCCCAGTGAGTCCATACTTTAAAAGAGAAATTAGCCTGGAATTGTGTAGACACCACTACTTGAGCAGCTGAAGAAGTAAGATACATGAGTCCAGAAATTTGGGACCAGCCTGAGAAACACAGAAAGACCCTCTGTGTTGAGTAAAAATAAAATAAACAAGCAAACAAACAAAGAAATATTTGACAATGTCTCTACAATGTAGGCAGTAGTAAACTAGAGAGATTCTATGTACTGTATTAAGCACCCGATATATCCAAGATTCAGGAAAACATTCCATGAGAAATGATAGTGCCCTATCTAATATTATATCCCCACTGGAAAAGAAGGGTCCCAAAGAAAGAAAAGCTCAAAATTCTTACTCCATTCTGTCTCATCCTACCAAGAGTTCCTTCTATAAAACACTGACCTGAGGAAAGGGCATCATTCTCATTTCATGGGAGAACAATAAATTACAAATATAAGGAAGGTAAAGAGACAATCCCCACTTCCCATTGTTGAAATTTGTCCAAAATCCTTGAGTATGCATACTCCTTGGGACATCAGAGTTAGGTTGCTGCCCTTCATAATACATACACCACATGAAGTTAACACTAAAGCATCACCCTTACTAGGAATCACAAATAATTCACAAAATAACTCACTGGTACTATGACTAGAACAGCCTAATAAAATGTTTGAATAGTCTCATATATTTTTTAGCTCCCTGAATTACAATACATGTATATTTCTCTAGCTGATTAAAAATAACACTGACAAATATTAAATACATCATGTCACATCTCTATGCTGTGTTTCCTTTTTTTAATAGCAATAGAACTATTCTCAGTCGCTTTTCTCAGCGCTCTTATGCTCCACATTGTCCACCCATATCAATTTAAAGAGGCCAATTTTCCAACATTTATAACCACTCTCTGAGTCTCATTAATTCCCCATCTCTTTCCTTCTCCCCTTTTATAG
Seq C2 exon
AAATATTGCATTAACTTTGAATGTAACTGCTGGAGAACATGACTTGAGCCAAGCCGAACCAGGAGAACAAACACTTGCCATTGAAACCATCATCATACACCCGCAGTTCTCCACCAAAAAACCTATGAACTATGATATAGCCCTTCTGAAGATGGTTGGAACCTTCCAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019794:ENSRNOT00000026807:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(12.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTCTGAAACAAAAGCAGAAGC
R:
GTTCCAACCATCTTCAGAAGGGC
Band lengths:
254-1779
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]