GgaEX1042634 @ galGal4
Exon Skipping
Gene
ENSGALG00000011537 | PDE10A
Description
phosphodiesterase 10A [Source:HGNC Symbol;Acc:HGNC:8772]
Coordinates
chr3:42463951-42467990:+
Coord C1 exon
chr3:42463951-42464242
Coord A exon
chr3:42466811-42467352
Coord C2 exon
chr3:42467943-42467990
Length
542 bp
Sequences
Splice sites
3' ss Seq
GTCAAAATATTTTTTTACAGAGG
3' ss Score
6.06
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GGCTCGCTGTTCCGCTTCGCGGCCGCCGGCCCCCGGCAGCACCACCCGCGGCTCCTCCTCCCCGCGGCCGCCTCTCGCCCGTGGTCCTGCGCTTTCCTCGGCGCTGCAGCGGCGGCCGCCCGCGGCGACGGGATCCGAGGAGGCGACGGCCCCGGCGGGAGCGGGACTGCGCGGCGGCTGCGAGGCGCCTTCTTCTCCTTCTCGTCTCCCCTGCTCCCGGGGCCAGACATGGAAGATGGATCTAATTCTGCCAGCTGCTTCAGGAGGTTTACGGACTGTTTCCTGAACACAA
Seq A exon
AGGAAAACTGAAGAGTTCTTCTGTAGGGAAGAGAACTGAGATGAGCTCTTGGGGAGGGAGACTTAAAAGGGACCTAGCAGAATCTTCAAGACAGAAAACAATGAAGTTGCTCAAGGTGTATTCCTCTTATCTGACCTCATTTGACTTGGGCACGCTCAAATCAGGATTTCACCAGCAGGTTACTGATTCTAGTAAAATTTTAGACTCTGCAAGATTCACTTTGTGCTGTGTCTGACTTTTTATTTTCCTTAAGATTGACTTAAGCATGGAGCTGCAGAGGCTTGTATGAACTGTGTGTGGTGTTCTTAATTGTATTCAGGTCTGTGACTTTGTGCGTAATGTGGTGTTTTGAGAAACATATAAAGTCTACCATCCTGGGCCAGTTCTTTAGTGATGTTCTGCCACAGCTAAGGCACTGCAGGTTGTCAGGCACACCAGGGCTTTGTGACGTGTCTTGCTTCCAGGGCGATGGCCCACGTTCCTTCTACACAGAAGATCTCGCAAGCCACACGCGTGTAGCGTATTTCACCCATTAACCATGT
Seq C2 exon
GGAGAAGGGGCTCATGGATGCAGCAGACCACCAGGAGTTATGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011537-'0-1,'0-0,2-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000018810fB10395
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCGCTGTTCCGCTTC
R:
CACATAACTCCTGGTGGTCTGC
Band lengths:
336-878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]