GgaEX1042642 @ galGal4
Exon Skipping
Gene
ENSGALG00000011537 | PDE10A
Description
phosphodiesterase 10A [Source:HGNC Symbol;Acc:HGNC:8772]
Coordinates
chr3:42463951-42535118:+
Coord C1 exon
chr3:42463951-42464242
Coord A exon
chr3:42467943-42467990
Coord C2 exon
chr3:42534990-42535118
Length
48 bp
Sequences
Splice sites
3' ss Seq
CACTCCTGTTCCAATTATAGGGA
3' ss Score
8.34
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGCTCGCTGTTCCGCTTCGCGGCCGCCGGCCCCCGGCAGCACCACCCGCGGCTCCTCCTCCCCGCGGCCGCCTCTCGCCCGTGGTCCTGCGCTTTCCTCGGCGCTGCAGCGGCGGCCGCCCGCGGCGACGGGATCCGAGGAGGCGACGGCCCCGGCGGGAGCGGGACTGCGCGGCGGCTGCGAGGCGCCTTCTTCTCCTTCTCGTCTCCCCTGCTCCCGGGGCCAGACATGGAAGATGGATCTAATTCTGCCAGCTGCTTCAGGAGGTTTACGGACTGTTTCCTGAACACAA
Seq A exon
GGAGAAGGGGCTCATGGATGCAGCAGACCACCAGGAGTTATGTGGAAG
Seq C2 exon
GTTTAACAGATGAAAAAGTGAAGGCCTATCTTTCCCTTCATCCCCAGGTACTGGATGAGTTTGTGTCAGAGAGTGTAAGTGCGGAAACTGTTGAAAAATGGCTAAAAAGAAAAAACAACAGACAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011537_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.233
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000018810fB10395
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCTGCCAGCTGCTTCAGG
R:
TCCGCACTTACACTCTCTGACA
Band lengths:
134-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]