GgaEX1043812 @ galGal3
Exon Skipping
Gene
ENSGALG00000013117 | PIK3C2G
Description
NA
Coordinates
chr1:66223217-66255118:+
Coord C1 exon
chr1:66223217-66223311
Coord A exon
chr1:66253504-66253684
Coord C2 exon
chr1:66255011-66255118
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCTCCTCCCTTCAGGCT
3' ss Score
12.32
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTGCTCAAGTTTGAATGGAGTCTGGAAGGCCCTCTGGTGAAACTCCTGCTGAATCGCTCCCTTCAGAGCATCCAAGTAGCCCATCAACTTTACTG
Seq A exon
GCTATTGAAGAATGCACAGAATGAAGTTCATTTCAAAGTCTGGTATCGGAAACTACTGGCTGCTCTCCAATTCACTGCTGGGAAAGCCTTGAACAATGAATTTTCTAAGGAGGAGAAACTTATCAGAATTTTGGAAGACACTGCTGAAAAAGTAAAAGTTGCCAGTGACGCAAAAAGAAAG
Seq C2 exon
GAGGTGTTAAAGATGGAACTCAACAGACTTCAGCAATTCTTCCAGGAGGTAAAAGTTTGCCGACTTCCCTTGAACCCTGCACTTGTTGTGCAAGGCATAGAGGCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.8=100)
A:
PF0061315=PI3Ka=PD(18.9=57.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAAGTTTGAATGGAGTCTGG
R:
ATCTGCCTCTATGCCTTGCAC
Band lengths:
202-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]