GgaEX1043812 @ galGal4
Exon Skipping
Gene
ENSGALG00000013117 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr1:64216325-64248226:+
Coord C1 exon
chr1:64216325-64216419
Coord A exon
chr1:64246612-64246792
Coord C2 exon
chr1:64248119-64248226
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCTCCTCCCTTCAGGCT
3' ss Score
12.32
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GTGCTCAAGTTTGAATGGAGTCTGGAAGGCCCTCTGGTGAAACTCCTGCTGAATCGCTCCCTTCAGAGCATCCAAGTAGCCCATCAACTTTACTG
Seq A exon
GCTATTGAAGAATGCACAGAATGAAGTTCATTTCAAAGTCTGGTATCGGAAACTACTGGCTGCTCTCCAATTCACTGCTGGGAAAGCCTTGAACAATGAATTTTCTAAGGAGGAGAAACTTATCAGAATTTTGGAAGACACTGCTGAAAAAGTAAAAGTTGCCAGTGACGCAAAAAGAAAG
Seq C2 exon
GAGGTGTTAAAGATGGAACTCAACAGACTTCAGCAATTCTTCCAGGAGGTAAAAGTTTGCCGACTTCCCTTGAACCCTGCACTTGTTGTGCAAGGCATAGAGGCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117_MULTIEX1-1/13=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.8=100)
A:
PF0061315=PI3Ka=PD(18.9=57.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAAGTTTGAATGGAGTCTGG
R:
ATCTGCCTCTATGCCTTGCAC
Band lengths:
202-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]