DreEX0006785 @ danRer10
Exon Skipping
Gene
ENSDARG00000099803 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr18:50912007-50913119:-
Coord C1 exon
chr18:50913025-50913119
Coord A exon
chr18:50912237-50912417
Coord C2 exon
chr18:50912007-50912114
Length
181 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGCAGGCT
3' ss Score
9.11
5' ss Seq
AAGGTGCAC
5' ss Score
4.22
Exon sequences
Seq C1 exon
GCCCTGAAGAGTGAGTGGGAGATCGACGGGCCACTGGTGAAGCTTCTGCTGTCCAGATCCATGAGCAGCGTCCGCATCGCTCACCAGCTCTACTG
Seq A exon
GCTGCTGCTGGACGCTCTGCAGGACACACTCTTCAGCAGTTTTCTCAGTAAGGTGGTGTGTGTGCTGAAGCACTGCTGCGGGCGCGCTCTGAGGCTGGAGCTGCAGCAGGAGCAGCGGCTGCTGGATCTGCTCACACTGCTGGCCCAGAGCGTACGCACCGCCGACAGGCCCAAGAGAAAG
Seq C2 exon
GAGCTGCTGATGAGGGAGCGCTGGAAGCTGGTGAGCTTCTTTGCGGACGGTGTGAGCTGCAGACTCCCGCTAGACCCGGCGCTGCTGCTCAGAGGAGTCAACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099803-'18-19,'18-18,19-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.8=100)
A:
PF0061315=PI3Ka=PD(18.5=55.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAAGAGTGAGTGGGAGA
R:
CTCAGTGTTGACTCCTCTGAGC
Band lengths:
202-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]