BtaEX6067414 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2003903-2005655:-
Coord C1 exon
chr16:2005561-2005655
Coord A exon
chr16:2004718-2004898
Coord C2 exon
chr16:2003903-2004010
Length
181 bp
Sequences
Splice sites
3' ss Seq
CGCTTCCCTTTGCCGGATAGGTT
3' ss Score
8.17
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCCTTAAAGTATGAATGCTACCTGGACAGCCCCTTGGTGCGCTTCCTCCTGAAGCGAGCGGTCTCTGACTTGAGAGTGACTCACTACTTCTTCTG
Seq A exon
GTTGCTGAAGGACGGCCTCAAAGACTCTCAGTTCAGCATCCGCTACCAGTACCTGCTGGCCGCCTTGTTGTGTTGCTGTGGCAAGGGGCTGAGAGAGGAGTTTAACCGCCAGTGCTGGCTTGTTAATACCCTGGCCAAACTGGCCCAGCAGGTCCGGGAGGCTGCCCCGTCTGCACGGCAG
Seq C2 exon
GGCATCCTCCGTGCCGGCCTGGAGGAGGTGGAGCAGTTCTTCGTCCTCAATGGCTCCTGCCGCCTGCCCCTCAGCCCCAGTCTGCTGGTTAAGGGCGTCGTGCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633-'22-24,'22-22,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=FE(16.9=100)
A:
PF0061315=PI3Ka=PD(19.1=57.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTAAAGTATGAATGCTACCTGGA
R:
GACGCCCTTAACCAGCAGAC
Band lengths:
194-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]